bioRxiv Science⌕ Search

Biology subjects

Mohammad, J.

Publications and source records attributed to Mohammad, J..

2 recordsLinked to original sources

Reduced-order modeling of solute transport within physiologically realistic solid tumor microenvironment

AO_SCPLOWBSTRACTC_SCPLOWSolid tumors are characterized by densely packed extracellular matrices and limited vascularization, creating significant resistance to both diffusive and convective transport. In this study, we developed an integration of numerical computations with a theoretical modeling framework that couples three phase viscous-laminar transient simulations of glycocalyx-patched tumor vessel resolving plasma, red blood cells (RBCs), and white blood cells (WBCs) and tracking their volume fractions to a calibrated reverse advection-diffusion (RAD) model for intratumoral plasma transport. The reduced-order tumor microenvironment model uses histology-informed extracellular matrix (ECM) tumor domain and packing fraction, together with explicit glycocalyx-patch electrohydrodynamics (EHD) at the tumor vessel wall. At the fenestra, EHD increases inlet plasma intensity relative to a non-EHD framework across all models (means: 0.576 non-EHD vs 0.722 EHD; gain 25.34%). Numerical simulations of plasma perfusion in both the tumor ECM domain and a microfluidic benchmark exhibit two-stage kinetics, with an initial advection-dominated regime. The RAD model reproduces this behavior and, after a simple temporal calibration to account for pore-scale hydrodynamic acceleration resolved by computational fluid dynamics (CFD), matches the observed propagation. By using fully resolved, EHD-inclusive multiphase CFD simulations to calibrate a reduced-order RAD model parameterized by measurable geometric features, we bridge the gap between classical Darcy-Starling tissue perfusion models and fully resolved CFD. The resulting framework provides a tractable, mechanism-grounded tool for quantifying plasma progression in dense solid tumors.

physiology↗

Computational multiphase characterization of perfusion trends inside biomimetic reduced-order dense tumors

Dense fibrous extracellular constitution of solid tumors exerts high resistance to diffusive transport into it; additionally, the scarcity of blood and lymphatic flows hinders convection. The complexity of fluidic transport mechanisms in such tumor environments still presents open questions with translational end goals. For example, clinical diagnosis and targeted drug delivery platforms for such dense tumors can ideally benefit from a quantitative framework on plasma uptake into the tumor. In this study, we present a computational model for physical parameters that may influence blood percolation and penetration into a simple biomimetic solid tumor geometry. The model implements 3-phase viscous laminar transient simulation to mimic the transport physics inside a tumor-adhering blood vessel and measures the constituent volume fractions of the three considered phases, viz. plasma, RBCs (Red Blood Cells, also known as "erythrocytes"), and WBCs (White Blood Cells, also known as "leukocytes") at three different flow times, while simultaneously recording the plasma pressure and velocity at the entry point to the tumors extracellular space. Subsequently, to quantify plasma perfusion within the tumor zone, we have proposed a reduced-order 2D transport model for the tumor entry zone and its extracellular space for three different fenestra diameters: 0.1, 0.3, and 0.5 m; the simulations were 2-phase viscous laminar transient. The findings support the hypothesis that plasma percolation into the tumor is proportional to the leakiness modulated by the fenestra openings, quantifiable through the opening sizes.

biophysics↗