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Miyashita, E.

Publications and source records attributed to Miyashita, E..

3 recordsLinked to original sources

Neuroscience-Inspired Deep Learning Brain-Machine Interface Decoder

Brain-machine interfaces (BMIs) aim to decode motor intentions from neural activity to enable direct control of external devices. However, most existing decoders rely on monolithic architectures that fail to capture the distinct neural representations of different joint movement directions, limiting their generalizability. In this work, we propose a Single-Direction CNN-LSTM decoder inspired by motor cortex encoding mechanisms, which separately models extension and flexion dynamics through parallel CNN-LSTM branches. Each branch extracts spatial-temporal features from neural spike data and predicts directional joint variables, which are then combined by subtraction to yield the net angular velocity and torque of upper-limb joints. Using invasive recordings from a macaque during a 2D center-out reaching task, we demonstrate that our decoder achieves comparable performance to a conventional CNN-LSTM when trained on all tasks, while significantly outperforming both CNN-LSTM and linear regression baselines in cross-target generalization scenarios. Moreover, the model can capture physiologically meaningful co-contraction patterns, providing richer insights into motor control. These results suggest that incorporating neuroscience-inspired modular decoding into deep neural architectures enhances robustness and adaptability across tasks, offering a promising pathway for BMI applications in prosthetics and rehabilitation.

bioengineering↗

SERF2, an RNA G-quadruplex Binding Protein, promotes stress granule formation

Liquid-liquid phase transitions govern a wide range of protein-protein and protein-RNA interactions. Although the importance of multivalency and protein disorder in driving these transitions is clear, there is limited knowledge concerning the structural basis of phase transitions or the conformational changes that accompany this process. In this work, we found that a small human protein, SERF2, is important for the formation of stress granules. We determined the solution NMR structure ensemble of SERF2. We show that SERF2 specifically interacts with non-canonical tetrahelical RNA structures called G-quadruplexes, structures linked to stress granule formation. The biophysical amenability of both SERF2 and RNA G4 quadruplexes have allowed us to characterize the multivalent protein-RNA interactions involved in liquid-liquid phase transitions, the role that protein disorder plays in these transitions, identify the specific contacts involved, and describe how these interactions impact the structural dynamics of the components enabling a detailed understanding of the structural transitions involved in early stages of ribonucleoprotein condensate formation.

cell biology↗

Fluid flow-induced left-right asymmetric decay of Dand5 mRNA in the mouse embryo requires Bicc1-Ccr4 RNA degradation complex

Molecular left-right (L-R) asymmetry is established at the node of the mouse embryo as a result of the sensing of a leftward fluid flow by immotile cilia of perinodal crown cells and the consequent degradation of Dand5 mRNA on the left side. We here examined how the fluid flow induces Dand5 mRNA decay. We found that the 3 untranslated region (3-UTR) of Dand5 mRNA is necessary and sufficient for the left-sided decay and is responsive to the flow direction, loss of the cation channel Pkd2, and Ca2+. The 200-nucleotide proximal-most portion of the 3-UTR, which is conserved among mammals, is essential for the asymmetric mRNA decay and binds Bicc1, an RNA binding protein specifically expressed at the node. Bicc1 preferentially recognizes GAC and GACR sequences in RNA, and these motifs are enriched in the 200-nucleotide region of the Dand5 3-UTR. The Cnot3 component of the Ccr4-Not deadenylase complex interacts with Bicc1 and is also required for Dand5 mRNA decay at the node. Our results thus suggest that leftward fluid flow induces binding of Bicc1 to the 3-UTR of Dand5 mRNA in crown cells on the left side of the node, and that consequent recruitment of Ccr4-Not mediates mRNA degradation.

developmental biology↗