Biology subjects

Miyagi, A.

Publications and source records attributed to Miyagi, A..

3 recordsLinked to original sources

bioRxiv2025

Metabolism of L-threonate, an ascorbate degradation product, requires a protein with L-threonate metabolizing domains in Arabidopsis

L-Threonate is one of the major degradation products of ascorbate in plants. While bacteria can utilize L-threonate as a sole carbon source by converting it to dihydroxyacetone phosphate, a glycolysis intermediate, through a three- or four-step metabolic pathway, the corresponding processes in plants remain uncharacterized. Remarkably, an Arabidopsis gene encodes a unique protein containing domains homologous to all three enzymes involved in the bacterial three-step pathway. We designated this protein as L-threonate metabolizing domains (LTD) and investigated its functional role in plant L-threonate metabolism. Despite extensive efforts, recombinant expression of LTD was unsuccessful, likely due to its large protein size. Therefore, a reverse genetic approach was employed, using ltd knockout Arabidopsis lines to explore LTD function. Under continuous dark conditions, where ascorbate degradation is facilitated, LTD transcription was significantly upregulated, leading to increased L-threonate dehydrogenase (LtnD) activity. Knockout lines of LTD exhibited no detectable LtnD activity under both light and dark conditions, alongside elevated levels of L-threonate compared to wild-type plants. These results indicate that LTD is essential for L-threonate metabolism in Arabidopsis. The LTD gene is highly conserved among land plants but is absent in green algae, providing a hypothesis that the rise in ascorbate concentrations during plant evolution necessitated a more active metabolism of ascorbate degradation products.

plant biology↗

bioRxiv2021

Intraspecific interaction of host plant influences local distribution of specialist herbivores through metabolic alterations in leaves

O_LIRecent studies suggest that changes in leaf traits due to interactions between plants affect the resource utilisation and distribution of herbivores. However, this has not yet been confirmed experimentally. Here, we investigated the effects of phenotypic plasticity in leaf traits of Rumex obtusifolius (host plant) in response to the intra- and interspecific interaction on distribution of two leaf beetles, Gastrophysa atrocyanea (specialist herbivore) and Galerucella grisescens (generalist herbivore). C_LIO_LIWe investigated the local population density of R. obtusifolius plants and the presence of leaf beetles on the plants at five study sites. Leaf chemicals (condensed tannins and total phenolics) were compared between aggregated and solitary R. obtusifolius plants. To clarify the effects of the interaction environment of R. obtusifolius plants on their leaf traits and resource utilisation by leaf beetles, we conducted cultivation and preference experiments. Leaf chemicals (chlorophylls, organic acids, primary metabolites, condensed tannins and total phenolics) and preferences of adult leaf beetles were compared between intraspecific, interspecific plant interaction, or no-interaction treatments. Finally, we evaluated the effects of interaction between R. obtusifolius on leaf beetle distribution in mesocosm experiments. C_LIO_LIIn the field, the presence of the specialist leaf beetle, G. atrocyanea, was positively correlated with the local population density (rosette overlap ratio) of R. obtusifolius plants; however, no correlation was observed in the case of the generalist leaf beetle, G. grisescens. In the cultivation experiment, plants in the intraspecific interaction treatment increased their leaf contents of condensed tannins and total phenolics, and G. atrocyanea consumed more of these leaves than leaves in other treatments. Similar results were observed in the field. In the mesocosm experiment, larger numbers of G. atrocyanea were distributed on R. obtusifolius plants exposed to below-ground intraspecific interaction than on plants not exposed to intraspecific interaction. C_LIO_LIOur results provide experimental evidence that leaf-trait changes in response to intraspecific interaction between host plants influence specialist herbivore distribution. This highlights the need to integrate plant-plant interactions into our understanding of plant-animal interactions. C_LI

ecology↗

bioRxiv2019

Excessive assimilation of ammonium by plastidic glutamine synthetase is a major cause of ammonium toxicity in Arabidopsis thaliana

Plants use nitrate and ammonium in the soil as their main nitrogen sources. Recently, ammonium has attracted attention due to evidence suggesting that, in C3 species, an elevated CO2 environment inhibits nitrate assimilation. However, high concentrations of ammonium as the sole nitrogen source for plants causes impaired growth, i.e. ammonium toxicity. Although ammonium toxicity has been studied for a long time, the primary cause remains to be elucidated. Here, we show that ammonium assimilation in plastids rather than ammonium accumulation is a primary cause for toxicity. Our genetic screen of ammonium-tolerant Arabidopsis lines with enhanced shoot growth identified plastidic GLUTAMINE SYNTHETASE 2 (GLN2) as the causal gene. Our reciprocal grafting of wild-type and GLN2 or GLN1;2-deficient lines suggested that shoot GLN2 activity results in ammonium toxicity, whilst root GLN1;2 activity prevents it. With exposure to toxic levels of ammonium, the shoot GLN2 reaction produced an abundance of protons within cells, thereby elevating shoot acidity and stimulating expression of acidic stress-responsive genes. Application of an alkaline ammonia solution to the toxic ammonium medium efficiently alleviated the ammonium toxicity with a concomitant reduction in shoot acidity. Consequently, we conclude that a primary cause of ammonium toxicity is acidic stress in the shoot. This fundamental insight provides a framework for enhanced understanding of ammonium toxicity in plants.

plant biology↗