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Meireles, F.

Publications and source records attributed to Meireles, F..

3 recordsLinked to original sources

Cardiolipin clustering promotes mitochondrial membrane dynamics

Cardiolipin (CL) is a mitochondria-specific phospholipid that forms heterotypic interactions with membrane-shaping proteins and regulates the dynamic remodeling and function of mitochondria. However, the precise mechanisms through which CL influences mitochondrial morphology are not well understood. In this study, employing molecular dynamics (MD) simulations, we determined that CL molecules extensively engage with the paddle domain (PD) of mitochondrial fusion protein Optic Atrophy 1 (OPA1), which controls membrane-shaping mechanisms. Structure-function analysis confirmed the interactions between CL and two conserved motifs of OPA1 at the membrane-binding sites. We further developed a bromine-labeled CL probe to enhance cryoEM contrast and characterized the structure of OPA1 assemblies bound to the CL-brominated lipid bilayers. Our images provide direct evidence of CL enrichment within the OPA1-binding leaflet. Last, we observed a decrease in membrane remodeling activity for OPA1 in lipid compositions with increasing concentrations of monolyso-cardiolipin (MLCL). This suggests that the partial replacement of CL by MLCL, as observed in Barth syndrome-associated mutations of the tafazzin phospholipid transacylase, alters the malleability of the membrane and compromises proper remodeling. Together, these data provide insights into how biological membranes regulate the mechanisms governing mitochondrial homeostasis.

biophysics↗

Context-aware geometric deep learning for protein sequence design

Protein design and engineering are evolving at an unprecedented pace leveraging the advances of deep learning. Current models nonetheless cannot natively consider non-protein entities within the design process. Here we introduce a deep learning approach based solely on a geometric transformer of atomic coordinates that predicts protein sequences from backbone scaffolds aware of the restraints imposed by diverse molecular environments. This new concept is anticipated to improve the design versatility for engineering proteins with desired functions.

biochemistry↗

Transcranial electrical stimulation modulates emotional experience and metabolites in the prefrontal cortex in a donation task

In this study we investigated whether transcranial Direct Current Stimulation (tDCS) applied to two prefrontal cortex regions, the ventromedial prefrontal cortex (vmPFC, anode) and right dorsolateral prefrontal cortex (DLPFC, cathode) can be used to induce changes in self-reported emotions and modulate metabolite concentrations under both electrodes. We employed in vivo quantitative MR Spectroscopy (MRS) in healthy adult participants and quantified the changes in GABA and Glx complex (Glutamate and Glutamine) before and after five sessions of tDCS stimulation. tDCS was delivered at 2mA intensity for 20 minutes for the active group and 1 minute for the sham group. tDCS was applied over five days while participants were engaged in a charitable donation task, known to engage the reward network. We observed increased levels of GABA in vmPFC, but not in DLPFC. Glx levels were decreased in both vmPFC and DLPFC. We found that self-reported happiness increased significantly over time only in the active group. There was a decrease in self-reported guiltiness in both active and sham groups. Altogether, the results indicate that self-reported emotions can be modulated by prefrontal stimulation. This may be because the changes in GABA and Glx concentrations following repeated stimulation induce remote changes in the reward network through interactions with other metabolites, previously thought to be unreachable with noninvasive stimulation techniques.

neuroscience↗