Biology subjects

Mediano, P.

Publications and source records attributed to Mediano, P..

4 recordsLinked to original sources

bioRxiv2022

Neural mass modelling for the masses: Democratising access to whole-brain biophysical modelling with FastDMF

Different whole-brain models constrained by neuroimaging data have been developed during the last years to investigate causal hypotheses related to brain mechanisms. Among these, the Dynamic Mean Field (DMF) model is a particularly attractive model, combining a biophysically realistic single-neuron model that is scaled up via a mean-field approach and multimodal imaging data. Despite these favourable features, an important barrier for a widespread usage of the DMF model is that current implementations are computationally expensive - to the extent that the model often becomes unfeasible when no high-performance computing infrastructure is available. Furthermore, even when such computing structure is available, current implementations can only support simulations on brain parcellations that consider less than 100 brain regions. To remove these barriers, here we introduce a user-friendly and computationally-efficient implementation of the DMF model, which we call FastDMF, with the goal of making biophysical whole-brain modelling accessible to neuroscientists worldwide. By leveraging a suit of analytical and numerical advances - including a novel estimation of the feedback inhibition control parameter, and a Bayesian optimisation algorithm - the FastDMF circumvents various computational bottlenecks of previous implementations. An evaluation of the performance of the FastDMF showed that it can attain a significantly faster performance than previous implementations while reducing the memory consumption by several orders of magnitude. Thanks to these computational advances, FastDMF makes it possible to increase the number of simulated regions by one order of magnitude: we found good agreement between empirical and simulated functional MRI data parcellated at two different spatial scales (N=90 and N=1000 brain regions). These advances open the way to the widespread use of biophysically grounded whole-brain models for understanding the interplay among anatomy, function and brain dynamics in health and disease, and to provide mechanistic explanations of recent results obtained from empirical fine-grained neuroimaging data sets, such as turbulence or connectome harmonics. HighlightsO_LIWe present the FastDMF, a user-friendly and computationally efficient implementation of the Dynamic Mean Field model for simulations of whole-brain dynamics. C_LIO_LIUsing analytical and numerical tools, we develop a novel estimation of the feedback inhibition control based on the structural connectivity, bypassing an important computational bottleneck. C_LIO_LIThe FastDMF is coupled with a Bayesian Optimization algorithm significantly reducing the number of simulations required to fit the FastDMF to empirical neuroimaging data. C_LIO_LIOur advances open the possibility of simulating thousands of brain regions in a biophysically grounded whole-brain model. C_LI

neuroscience↗

bioRxiv2022

Psychedelics and schizophrenia: Distinct alterations to Bayesian inference

Schizophrenia and states induced by certain psychotomimetic drugs may share some physiological and phenomenological properties, but they differ in fundamental ways: one is a crippling chronic mental disease, while the others are temporary, pharmacologically-induced states presently being explored as treatments for mental illnesses. Building towards a deeper understanding of these different alterations of normal consciousness, here we compare the changes in neural dynamics induced by LSD and ketamine (in healthy volunteers) against those associated with schizophrenia, as observed in resting-state M/EEG recordings. While both conditions exhibit increased neural signal diversity, our findings reveal that this is accompanied by an increased transfer entropy from the front to the back of the brain in schizophrenia, versus an overall reduction under the two drugs. Furthermore, we show that these effects can be reproduced via different alterations of standard Bayesian inference applied on a computational model based on the predictive processing framework. In particular, the effects observed under the drugs are modelled as a reduction of the precision of the priors, while the effects of schizophrenia correspond to an increased precision of sensory information. These findings shed new light on the similarities and differences between schizophrenia and two psychotomimetic drug states, and have potential implications for the study of consciousness and future mental health treatments.

neuroscience↗

bioRxiv2022

Metastability, fractal scaling, and synergistic information processing: what phase relationships reveal about intrinsic brain activity

Dynamic functional connectivity (dFC) in resting-state fMRI holds promise to deliver candidate biomarkers for clinical applications. However, the reliability and interpretability of dFC metrics remain contested. Despite a myriad of methodologies and resulting measures, few studies have combined metrics derived from different conceptualizations of brain functioning within the same analysis - perhaps missing an opportunity for improved interpretability. Using a complexity-science approach, we assessed the reliability and interrelationships of a battery of phase-based dFC metrics including tools originated from dynamical systems, stochastic processes, and information dynamics approaches. Our analysis revealed novel relationships between these metrics, which allowed us to build a predictive model for integrated information using metrics from dynamical systems and information theory. Furthermore, global metastability - a metric reflecting simultaneous tendencies for coupling and decoupling - was found to be the most representative and stable metric in brain parcellations that included cerebellar regions. Additionally, spatiotemporal patterns of phase-locking were found to change in a slow, non-random, continuous manner over time. Taken together, our findings show that the majority of characteristics of resting-state fMRI dynamics reflect an interrelated dynamical- and informational-complexity profile, which is unique to each acquisition. This finding challenges the interpretation of results from cross-sectional designs for brain neuromarker discovery, suggesting that individual life-trajectories may be more informative than sample means. HighlightsO_LISpatiotemporal patterns of phase-locking tend to be time-invariant C_LIO_LIGlobal metastability is representative and stable in a cohort of heathy young adults C_LIO_LIdFC characteristics are in general unique to any fMRI acquisition C_LIO_LIDynamical- and informational-complexity are interrelated C_LIO_LIComplexity science contributes to a coherent description of brain dynamics C_LI

neuroscience↗

bioRxiv2021

Fluctuations in Neural Complexity During Wakefulness Relate To Conscious Level and Cognition

There has been considerable recent progress in measuring conscious level using neural complexity measures. For instance, such measures can reliably distinguish healthy awake from asleep subjects and vegetative state patients. However, this line of research has never explored the dynamics of conscious level during normal wakefulness. Being able to capture meaningful differences in conscious level during wakefulness may provide a vital new insight into the nature of consciousness, by demonstrating what biological, behavioural and cognitive factors relate to such differences. Here we take advantage of a large MEG and fMRI dataset of healthy adults, to examine within-subject conscious level fluctuations during resting state and tasks, by using a range of complexity measures. We first establish the validity of this approach in both neuroimaging domains by relating neural complexity measures to pre-existing techniques for capturing transitions of consciousness from full wakefulness into drowsiness and the earliest stages of sleep, finding decreased complexity as participants become increasingly drowsy. We further demonstrate that neural complexity measures in both MEG and fMRI change both within and between tasks, and relate to performance on an executive task, with higher complexity associated with better performance and faster reaction times. This approach provides a powerful new route to further explore the cognitive and neural underpinnings of consciousness.

neuroscience↗