Biology subjects

McFadyen, S.

Publications and source records attributed to McFadyen, S..

3 recordsLinked to original sources

bioRxiv2025

Evolutionary dynamics of the tgr gene family in Dictyostelium allows escape from Crozier's Paradox

Croziers Paradox states that genetic kin recognition will select for its own demise, and theoretical analyses over the past decades have supported this conclusion. Here we examine the molecular evolution of two kin recognition genes in the social amoeba Dictyostelium discoideum, tgrB1 and tgrC1, which enable cells to recognize and reject unrelated cells during cooperative multicellular development. Our results reveal extraordinary polymorphism in these genes, placing them amongst the most rapidly evolving genes in the genome. Co-occurring amoebae, isolated from just a few grams of soil, show highly diverged recognition alleles, indicating plentiful sequence variation that can impact social decision-making on a micro-scale. Analyses of closely related gene duplicates show dynamic evolution of the gene family as a whole, suggesting a mechanism for replenishing genetic variation lost through Croziers Paradox. Our results provide evidence that kin recognition loci can retain sufficient genetic variation in real-world settings and suggest that large gene families may be crucial to retaining genetic variation necessary to evade Croziers paradox.

evolutionary biology↗

bioRxiv2025

Hypermutable hotspot enables the rapid evolution of self/non-self recognition genes in Dictyostelium

Cells require highly polymorphic receptors to perform accurate self/non-self recognition. In the amoeba Dicytostelium discoideum, polymorphic TgrB1 & TgrC1 proteins are used to bind sister cells and exclude cheaters, but it remains unknown how cells continually generate this extreme genetic diversity. Here, we created a collection of chromosome-length, whole genome sequences from 10 Dictyostelium discoideum isolates and sister species to understand the evolution of the large tgr gene family. Our dataset includes AX2-214, a widely used D. discoideum lab strain, as well as complete genomes for two Chlamydia-like endosymbionts harbored within amoebae. We find that tgrB1 and C1 lie in a hypermutational hotspot, with haplotypes that undergo repeated intralocus recombination, duplications, transpositions, and inversions. These structural dynamics are highly localized adjacent to tgrB and C, resulting in the gain and loss of dozens of genes. The tgrBC genes themselves frequently duplicate and recombine, leading to the rapid generation of unique tgrBC repertoires. In the broader tgr gene family, some genes (e.g. tgrN) are single copy and syntenic across all the genomes, whereas others (e.g. tgrA) prolifically duplicate at similar rates to Dictyostelium transposons. Thus, the tgr genes are among the most rapidly evolving families genome-wide. We propose that the intense diversification within the tgrBC locus can help explain how these genes acquire such extreme levels of polymorphism, with parallels to the MHC immune genes in mammals and other allorecognition systems. This collection of amoeba genomes is also an ideal dataset for comparative genomics and molecular evolution in Amoebozoa. SignificanceThe ability to distinguish self from non-self is an essential part of innate immunity and multicellularity. In the amoeba Dicytostelium discoideum, cells form transient multicellular structures via aggregation. In the process, they exclude distantly-related cheater strains via highly polymorphic cell surface proteins, TgrB1 and TgrC1. We used this system to ask: how do organisms continually generate new variation in recognition factors? After sequencing a collection of Dictyostelium spp. genomes, we found that the tgrB and tgrC genes lie in an extraordinarily variable locus- a region with such high rates of gene birth and death that genomic similarities are quickly lost, even between closely related isolates. Thus, amoeba cell recognition mirrors self/non-self evolutionary dynamics found across the Tree of Life.

evolutionary biology↗

bioRxiv2024

Natural variation in fruiting body morphology in the amoeba Dictyostelium discoideum

Reproductive altruism, where some individuals reproduce and others do not, is considered one of the pinnacles of cooperative societies. However, the optimal level of reproductive altruism is likely to depend on inclusive fitness considerations, including the relatedness of reproducing to non-reproducing individuals, as well as the benefits and costs accruing to each, respectively. In the social amoeba Dictyostelium discoideum, thousands of cells aggregate to form a multicellular fruiting body. During this process, some cells die, forming a rigid stalk that supports the rest of the cells, which become viable spores. The level of stalk investment by the social group can therefore be considered a metric of altruism investment. Importantly, genetically unrelated cells can co-aggregate to produce chimeric fruiting bodies, and selection can favour genotypes that behave selfishly by preferentially forming spores and avoiding forming the stalk. Owing to the extreme differences in fitness consequences of stalk cells versus spores, the level of altruism investment is likely to be under strong selection. Here we examined clonal fruiting body morphology in four natural populations to assess the extent to which stalk investment varies within populations and is maintained to different extents among populations. We found variation in fruiting body size and stalk investment, at both a cm-scale and between geographically isolated populations. These findings indicate the divergent evolution of altruism investment with and among populations and demonstrate widespread potential for cheating.

evolutionary biology↗