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Biology subjects

McCabe, E.

Publications and source records attributed to McCabe, E..

4 recordsLinked to original sources

A general model for the evolution of thermal performance curves with application to real time-series data

Thermal performance curves (TPCs) are widely used to investigate the effect of changes in body temperature on an organisms performance. Despite empirical evidence that temperature-dependent performance is ubiquitous across taxa, the field lacks models for how thermal performance evolves under realistic timeseries, genetic architectures, and physiological constraints. We address this gap by integrating a mathematical model with individual-based quantitative population genetic simulations. Our model can predict the evolutionary trajectory and shape of TPCs for any given thermal regime. Our model reproduces core properties of TPC evolution from previous studies such as the emergence of generalists in variable environments, but also explains why organisms may evolve TPCs that do not match their historical body temperature range. We uncover novel dynamics of adaptive tracking, the most notable being multi-generation lags between temperature and TPC parameters that can lead to unexpected correlations between the two. Our model predicts empirically observed patterns of adaptive tracking of critical thermal minimum in the invasive pest Drosophila suzukii, including individual-level variability and multi-generation lags with changing temperature. Our results also highlight the limitations of models that ignore factors that influence TPC evolution and individual variability, such as autocorrelation in temperature timeseries, effective population size, evolution of additive genetic correlation in TPC parameters, genetic architecture, and physiological constraints. Our flexible simulation model can incorporate these factors and help generate empirically testable hypotheses of how species will evolve in response to global climate change.

evolutionary biology↗

Phenotypic and Genomic Evidence of Adaptive Tracking in Thermal Tolerance of Wild Populations of an Invasive Drosophila.

Adaptive tracking is an evolutionary process in which allele frequencies and phenotypes shift in response to temporally fluctuating environments. Currently it is unclear whether adaptive tracking causes predictable evolution of complex traits such as thermal tolerance. We investigated seasonal adaptive tracking of critical thermal minimum (CTmin) and genome-wide allele frequencies over multiple years in the invasive fly Drosophila suzukii. CTmin increased throughout the growing season, showing a lag of several generations between increasing temperature and evolutionary change. Genetic analyses indicate CTmin is highly polygenic, with little overlap between alleles associated with CTmin and other seasonally fluctuating alleles. Thus, polygenic traits may track seasonal environments without leaving strong genomic signals. By contrast, there were strong seasonal genomic signatures for alleles associated with oligogenic traits as such pesticide resistance and olfactory behavior. These findings suggest that seasonal adaptive tracking shapes a broad suite of traits that contribute to D. suzukiis invasion success.

evolutionary biology↗

Long-Term Rock Dove (Columba livia) Primordial Germ Cell Culture: A Tool for Avian Conservation

Primordial germ cells (PGCs) are critical tools for genome engineering and conservation in birds. While culture systems for chicken PGCs have been well established for nearly two decades, efforts to propagate PGCs from other avian species have proved exceptionally challenging, limiting the broader application of artificial reproductive technologies in birds. Here we report the first successful derivation and long-term culture of PGCs from the rock dove, or common pigeon (Columba livia). Guided by transcriptomic profiling of PGCs, we developed a species-specific medium that supports PGC maintenance and expansion. We identify insulin signaling as essential for survival and demonstrate that retinoic acid receptor inhibition, while maintaining vitamin A, is necessary for propagation. Supplementation with BMP4, LIF, GDNF, and pleiotrophin further enhances PGC proliferation. Cultured cells express canonical germline markers and migrate to the gonads following injection into both rock dove and chicken embryos, confirming functional competency. These findings establish a platform for germline manipulation and biobanking in Columbidae, broadening the applicability of reproductive technologies to conservation efforts.

cell biology↗

Yersinia canariae sp. nov., isolated from a human yersiniosis case

A Gram-negative rod from the Yersinia genus was isolated from a clinical case of yersiniosis in the United Kingdom. Long read sequencing data from an Oxford Nanopore Technology (ONT) MinION in conjunction with Illumina HiSeq reads were used to generate a finished quality genome of this strain. Overall Genome Related Index (OGRI) of the strain was used to determine that it was a novel species within Yersinia, despite biochemical similarities to Yersinia enterocolitica. The 16S ribosomal RNA gene accessions are MN434982-MN434987 and the accession number for the complete and closed chromosome is CP043727. The type strain is CFS3336T (=NCTC 14382T/ =LMG Accession under process).

microbiology↗