Biology subjects

McAinsh, A. D.

Publications and source records attributed to McAinsh, A. D..

14 recordsLinked to original sources

bioRxiv2025

Multi-nucleation in two-cell human embryos stems from spindle and metaphase plate incoherence in the first mitosis

The first embryonic division in humans is highly error-prone and a source of aneuploidies. Multi-nucleation is prevalent in two-cell human embryos, with unknown cause. Here, we live-image human zygotes to elucidate the features of the first mitosis that predispose embryos to multinucleation. We show that failure to collect chromosomes into a single mass and establish a bipolar spindle during zygotic metaphase leads to severe multi-nucleation. We find that KIF10/CENP-E kinesin activity is essential to prevent the formation of multiple spindle poles and to congress chromosomes onto a metaphase plate. Furthermore, although the spindle assembly checkpoint mediates a delay in response to a highly disorganised spindle, KIF10/CENP-E-inhibited embryos ultimately undergo the first mitosis with a chaotic anaphase. Therefore, defective chromosome congression in the zygote combined with a failure to sense this error cause multi-nucleation. Remarkably, multi-nucleation can be corrected during the second mitotic division in a KIF10/CENP-E-dependent manner. We suggest that multi-nucleation may be a safeguarding mechanism to prevent chromosome loss during the highly error-prone first embryonic mitosis.

cell biology↗

bioRxiv2025

Single kinetochores execute an ordered series of molecular events as the Spindle Assembly Checkpoint is silenced

The Spindle Assembly Checkpoint (SAC) delays anaphase onset until all kinetochores are stably attached to microtubules, thus promoting error-free chromosome segregation. Multiple molecular events are implicated in SAC silencing, including removal of phospho-marks, protein (un)binding, and structural reorganisation of the kinetochore - but we currently lack a quantitative map of how these events unfold through time. Here, we use the levels of the checkpoint protein MAD2 to create a pseudo-timeline of SAC silencing at single kinetochores. We demonstrate how silencing proceeds through an ordered series of molecular events where MAD2-Spindly unbinds first and then the KNL1 catalytic platform disassembles, with a pool of active MPS1 retained. Coincidently, the NDC80 ensemble reconfigures in response to high microtubule occupancy. Kinetochores next switch into a mature attachment state that then undergoes gradual further stabilisation through NDC80 tail dephosphorylation. By preventing biorientation, we also define otherwise hidden kinetochore states involved in error correction cycles. This includes a "poised" state which we propose allows for error correction and rapid reactivation of the SAC. These results provide a critical temporal framework for understanding the mechanisms of SAC silencing and error correction at single human kinetochores.

cell biology↗

bioRxiv2025

Bayesian data driven modelling of kinetochore dynamics: space-time organisation of the human metaphase plate

Mitosis is a complex self-organising process that achieves high fidelity separation of duplicated chromosomes into two daughter cells through capture and alignment of chromosomes to the spindle mid-plane. Chromosome movements are driven by kinetochores, multi-protein machines that attach chromosomes to microtubules (MTs), both controlling and generating directional forces. Using lattice light sheet microscopy imaging and automated near-complete tracking of kinetochores at fine spatio-temporal resolution, we produce a detailed atlas of kinetochore metaphase-anaphase dynamics in untransformed human cells (RPE1). We determined the support from this dataset for 17 models of metaphase dynamics using Bayesian inference, demonstrating (1) substantial sister asymmetry that transversely organises the metaphase plate (MPP), (2) substantial spatial organisation of KT dynamic properties within the MPP, and (3) mechanical parameter time dependence, K-fiber forces tuning over the last 5 mins of metaphase towards a set point referred to as the anaphase ready state. These spatio-temporal trends are robust to spindle assembly pathways that are error-prone, suggesting the underpinning processes of kinetochore heterogeneity are intrinsic to mitosis and possibly by design.

systems biology↗

bioRxiv2024

CelFDrive: Artificial Intelligence assisted microscopy for automated detection of rare events

11.1 SummaryCelFDrive automates high-resolution 3D imaging cells of interest across a variety of fluorescence microscopes, integrating deep learning cell classification from auxiliary low resolution widefield images. CelFDrive enables efficient detection of rare events in large cell populations, such as the onset of cell division, and subsequent rapid switching to 3D imaging modes, increasing the speed for finding cells of interest by an order of magnitude. 1.2 Availability and ImplementationCelFDrive is available freely for academic purposes at the CelFDrive GitHub repository. and can be installed on Windows, macOS or Linux-based machines with relevant conda environments [1]. To interact with microscopy hardware requires additional software; we use SlideBook software from Intelligent Imaging Innovations (3i), but CelFDrive can be deployed with any microscope control software that can interact with a Python environment. Graphical Processing Units (GPUs) are recommended to increase the speed of application but are not required. On 3i systems the software can be deployed with a range of microscopes including their Lattice LightSheet microscope (LLSM) and spinning disk confocal (SDC). 1.3 Contacts.brooks.2@warwick.ac.uk

bioengineering↗

bioRxiv2023

Age-dependent loss of cohesion protection in human oocytes

Aneuploid human eggs (oocytes) are a major cause of infertility, miscarriage and chromosomal disorders. Such aneuploidies increase greatly as women age, originating from defective linkages between sister-chromatids (cohesion) in meiosis. We found evidence that loss of a specific pool of the cohesin protector protein, shugoshin 2 (Sgo2) contributes to this phenomenon. Our data indicate that Sgo2 preserves sister chromatid cohesion in meiosis by protecting a cohesin bridge between sister chromatids. In human oocytes, Sgo2 localizes to both sub-centromere cups and the pericentromeric bridge which spans the sister chromatid junction. Sgo2 normally colocalizes with cohesin, however, in oocytes from older women, Sgo2 is frequently lost specifically from the pericentromeric bridge and sister chromatid cohesion is weakened. Mps1 and Bub1 kinase activities maintain Sgo2 at sub-centromeres and the pericentromeric bridge. Removal of Sgo2 throughout meiosis I by Mps1 inhibition reduces cohesion protection, increasing the incidence of single chromatids at meiosis II. Therefore, Sgo2 deficiency in human oocytes can exacerbate the effects of maternal age by rendering residual cohesin at pericentromeres vulnerable to loss in anaphase I. Our data show that maternal age-dependent loss of Sgo2 at the pericentromere bridge in human oocytes impairs cohesion integrity and contributes to the increased incidence of aneuploidy observed in human oocytes with advanced maternal age.

cell biology↗

bioRxiv2021

Bayesian inference of multi-point macromolecular architecture mixtures at nanometre resolution

AO_SCPLOWBSTRACTC_SCPLOWGaussian spot fitting methods have significantly extended the spatial range where fluorescent microscopy can be used, with recent techniques approaching nanometre (nm) resolutions. However, small inter-fluorophore distances are systematically over-estimated for typical molecular scales ([lsim] 50nm). This bias can be corrected computationally, but current algorithms are limited to correcting distances between pairs of fluorophores. Here we present a flexible Bayesian computational approach that infers the distances and angles between multiple markers and has several advantages over these previous methods. Specifically it improves confidence intervals for small lengths, estimates measurement errors of each fluorescent marker individually and infers the correlations between polygon lengths. The latter is essential for determining the full multi-fluorophore 3D architecture. We further developed the algorithm to infer the mixture composition of a heterogeneous population of multiple polygon states. We use our algorithm to analyse the 3D architecture of the human kinetochore, a macro-molecular complex that is essential for high fidelity cell division. We examine the conformational change induced by microtubule attachment using triple fluorophore marked data and demonstrate for the first time that in metaphase kinetochore conformation is heterogeneous.

molecular biology↗

bioRxiv2021

Microtubule-based mitotic spindles contain a micron-sized mixed-nucleotide zone

Current models infer that the microtubule-based mitotic spindle is built from GDP-tubulin with small GTP caps at microtubule plus-ends, including those that attach to kinetochores (K-fibres). Here we reveal that K-fibres additionally contain a dynamic mixed-nucleotide zone that reaches several microns in length. This zone becomes visible in cells expressing fluorescently labelled EBs, a known marker for GTP-tubulin, and endogenously-labelled HURP - a protein which we show to preferentially bind the GDP microtubule lattice in vitro. In living cells HURP accumulates on the ends of depolymerising K-fibres, whilst avoiding recruitment to nascent polymerising K-fibres. This gives rise to a growing "HURP-gap" which we can recapitulate in a minimal computational simulation. We therefore postulate that the K-fibre lattice contains a dynamic, micron-sized mixed-nucleotide zone. One Sentence SummaryWe reveal that the microtubules of the mitotic spindle contain a third, uncharacterized domain, a mixed nucleotide zone that resides between the GTP-cap and the GDP-tubulin lattice.

cell biology↗

bioRxiv2021

Kinetochore life histories reveal the origins of chromosome mis-segregation and correction mechanisms

Chromosome mis-segregation during mitosis leads to daughter cells with deviant karyotypes (aneuploidy) and an increased mutational burden through chromothripsis of mis-segregated chromosomes. The rate of mis-segregation and the aneuploidy state are hallmarks of cancer and linked to cancer genome evolution. Errors can manifest as "lagging chromosomes" in anaphase, although the mechanistic origins and likelihood of correction are incompletely understood. Here we combine lattice light sheet microscopy, endogenous protein labelling and computational analysis to define the life history of > 104 kinetochores throughout metaphase and anaphase from over 200 cells. By defining the "laziness" of kinetochores in anaphase, we reveal that chromosomes are at a considerable and continual risk of mis-segregation. We show that the majority of kinetochores are corrected rapidly in early anaphase through an Aurora B dependent process. Moreover, quantitative analyses of the kinetochore life histories reveal a unique dynamic signature of metaphase kinetochore oscillations that forecasts their fate in the subsequent anaphase. We propose that in diploid human cells chromosome segregation is fundamentally error prone, with a new layer of early anaphase error correction required for stable karyotype propagation.

cell biology↗

bioRxiv2020

The First Mitotic Division of the Human Embryo is Highly Error-prone

Aneuploidy in human embryos is surprisingly prevalent and increases drastically with maternal age, resulting in miscarriages, infertility and birth defects. Frequent errors during the meiotic divisions cause this aneuploidy, while age-independent errors during the first cleavage divisions of the embryo also contribute. However, the underlying mechanisms are poorly understood, largely because these events have never been visualised in living human embryos. Here, using cell-permeable DNA dyes, we film chromosome segregation during the first and second mitotic cleavage divisions in human embryos from women undergoing assisted reproduction following ovarian stimulation. We show that the first mitotic division takes several hours to complete and is highly variable. Timings of key mitotic events were, however, largely consistent with clinical videos of embryos that gave rise to live births. Multipolar divisions and lagging chromosomes during anaphase were frequent with no maternal age association. In contrast, the second mitosis was shorter and underwent mostly bipolar divisions with no detectable lagging chromosomes. We propose that the first mitotic division in humans is a unique and highly error-prone event, which contributes to fetal aneuploidies.

cell biology↗

bioRxiv2019

Ensemble-level organization of human kinetochores and evidence for distinct tension and attachment sensors

Kinetochores are multi-protein machines that form dynamic attachments to microtubules and generate the forces for chromosome segregation. High-fidelity is ensured because kinetochores can monitor attachment status and tension, using this information to activate checkpoints and error correction mechanisms. To explore how kinetochores achieve this we used two and three colour subpixel fluorescence localisation to define how six protein subunits from the major kinetochore complexes CCAN, MIS12, NDC80, KNL1, RZZ and the checkpoint proteins Bub1 and Mad2 are organised in the human kinetochore. This reveals how the kinetochore outer plate is a liquid crystal-like system with high nematic order and largely invariant to loss of attachment or tension except for two mechanical sensors. Firstly, Knl1 unravelling relays tension and secondly NDC80 jack-knifes under microtubule detachment, with only the latter wired up to the checkpoint signalling system. This provides insight into how kinetochores integrate mechanical signals to promote error-free chromosome segregation.

cell biology↗

bioRxiv2019

The dynamics of centromere motion through the metaphase-to-anaphase transition reveal a centromere separation order

During cell division, chromosomes align at the equator of the cell before sister chromatids separate to move to each daughter cell during anaphase. We use high-speed imaging, Bayesian modelling and quantitative analysis to examine the regulation of centromere dynamics through the metaphase-to-anaphase transition. We find that, contrary to the apparent instantaneous separation seen in low-frequency imaging, centromeres separate asynchronously over 1-2 minutes. The timing of separations negatively correlates with the centromere intersister distance during metaphase, which could potentially be explained by variable amounts of cohesion at centromeres. Depletion of condensin I increases this asynchrony. Depletion of condensin II, on the other hand, abolishes centromere metaphase oscillations and impairs centromere speed in anaphase. These results suggest that condensin complexes have broader direct roles in mitotic chromosome dynamics than previously believed and may be crucial for the regulation of chromosome segregation.

cell biology↗

bioRxiv2018

Bub1 is not required for the checkpoint response to unattached kinetochores in diploid human cells

Error-free chromosome segregation during mitosis depends on a functional spindle assembly checkpoint (SAC). The SAC is a multi-component signaling system that is recruited to incorrectly attached kinetochores to catalyze the formation of a soluble inhibitor, known as the mitotic checkpoint complex (MCC), which binds and inhibits the anaphase promoting complex [1]. We have previously proposed that two separable pathways, composed of KNL1-Bub3-Bub1 (KBB) and Rod-Zwilch-Zw10 (RZZ), recruit Mad1-Mad2 complexes to human kinetochores to activate the SAC [2]. We refer to this as the dual pathway model. Although Bub1 is absolutely required for MCC formation in yeast (which lack RZZ), there is conflicting evidence as to whether this is also the case in human cells based on siRNA studies [2-5]. Here we report, using genome editing, that Bub1 is not strictly required for the SAC response to unattached kinetochores in human diploid hTERT-RPE1 cells, consistent with the dual pathway model.

cell biology↗

bioRxiv2018

Cell transformation disrupts the efficiency of chromosome segregation through microtubule detyrosination

The general principles of chromosome segregation are highly conserved throughout eukaryotic evolution. However, it is unknown whether there are differences in spindle or kinetochore composition or architecture which influence the efficiency chromosome segregation in different cell types. Here we show that the transition of human retinal pigment epithelial cells to a mesenchymal phenotype causes a stabilisation of kinetochore-microtubule attachments and an increase in the frequency of chromosome mis-segregation, due to inefficient error-correction, during mitosis. We find that this is caused by microtubule detyrosination during the epithelial-to-mesenchymal transition and that parthenolide, a tubulin carboxypeptidase inhibitor, efficiently reverts mes-enchymal cells to the epithelial mode of chromosome segregation. We propose that reprogramming the post-translational modifications of the mitotic spindle decreases mitotic fidelity and may contribute to CIN in mesenchymal cell populations during tumorigenesis.

cell biology↗

bioRxiv2017

Single molecule mechanics reveal Kif15 as an active molecular ratchet with acute strain sensitivity

Human Kif15 is a tetrameric kinesin-12 that contributes critically to bipolar spindle assembly in eukaryotes. Here we examine its single molecule mechanics. Under hindering loads, Kif15 steps predominantly towards microtubule plus ends, with its forestep:backstep ratio decreasing exponentially with load and stall occurring at ~6pN. Between steps, Kif15 binds stably, usually via a single head domain. By complete contrast, under assisting loads, Kif15 detaches rapidly, even in AMPPNP. Furthermore, Kif15 can autoinhibit, via an interaction requiring its C-terminus. Autoinhibited Kif15 binds microtubules nucleotide-independently, resists both hindering and assisting loads, and is further stabilized by Tpx2, which interacts with the Kif15 C-terminus. Our data reveal the mechanics of Kif15 to be extraordinarily sensitive to loading direction. When unloaded, it walks rapidly; when pulled forwards it slips and when pulled backwards it grips. We discuss the implications of this unique mechanical behaviour for the roles of Kif15 in spindle function.

cell biology↗