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Mazur-Marzec, H.

Publications and source records attributed to Mazur-Marzec, H..

2 recordsLinked to original sources

Response of endolithic Chroococcidiopsis strains from the polyextreme Atacama Desert to light radiation

The Atacama Desert is known to be the place on Earth with one of the highest solar radiation limiting the presence of life to endolithic microhabitats and soil microbial ecosystems. Endolithic microbial communities are supported by photosynthetic primary producers, mainly cyanobacteria, which can be injured by UVR. Nevertheless, cyanobacteria exposed to high solar radiation and its harmful effects have developed a series of defense mechanisms: avoidance, antioxidant systems or production of photoprotective compounds such as scytonemin among others. Scytonemin is a liposoluble pigment whose absorption maxima are located in UVA and UVC range and highly absorbing in the UVB range. In order to elucidate the protection capacity of endolithic cyanobacteria against harmful radiation, two cyanobacterial strains from Chroococcidiopsis genus were isolated from different endolithic microhabitats in the Atacama Desert: UAM813 strain, originally from the cryptoendolithic microhabitat of halite (NaCl), and UAM816 strain from chasmoendolithic microhabitat of calcite (CaCO3). Both were exposed to PAR and UVR+PAR conditions studying their short-term response, as oxidative stress and long-term response, as scytonemin production, metabolic activity and ultrastructural damage. The observed response of both strains reveals a high sensitivity to direct light exposure, even to PAR. The differences in their acclimation suggest specific adaptation strategies related to their original microhabitat, revealing their protective potential and the strain specific environmental pressure selection to inhabit different microhabitats and exposed to different light conditions. ImportanceCyanobacteria are photosynthetic prokaryotes that inhabit most types of illuminated environments, even the endolithic microhabitats in cold and hot deserts. The environmental pressure caused by the extreme solar irradiation in the Atacama Desert involve that only those cyanobacterial strains able to cope with it can be found in these endolithic communities, usually dominated by members belonging to the extremotolerant Chroococcidiopsis genus. Here, a comprehensive analysis of multiple lines of defense against harmful sun radiation was conducted to diagnose the response of two Chroococcidiopsis strains isolated from different endolithic microhabitats and lithic substrates, and identify its relation with the original microenvironmental conditions of each strain. Our results contribute to a better understanding of the acclimation strategies developed by these cyanobacterial strains and its potential protective role for the whole endolithic microbial community.

microbiology

Comprehensive database of secondary metabolites from cyanobacteria

Cyanobacteria form harmful mass blooms in freshwater and marine environments around the world. A range of secondary metabolites has been identified from cultures of cyanobacteria and biomass collected from cyanobacterial bloom events. A comprehensive database is necessary to correctly identify cyanobacterial metabolites and advance research on their abundance, persistence and toxicity in natural environments. We consolidated open access databases and manually curated missing information from the literature published between 1970 and March 2020. The result is the database CyanoMetDB, which includes more than 2000 entries based on more than 750 literature references. This effort has more than doubled the total number of entries with complete literature metadata and structural composition (SMILES codes) compared to publicly available databases to this date. Over the past decade, more than one hundred additional secondary metabolites have been identified yearly. We organized all entries into structural classes and conducted substructure searches of the provided SMILES codes. This approach demonstrated, for example, that 65% of the compounds carry at least one peptide bond, 57% are cyclic compounds, and 30% carry at least one halogen atom. Structural searches by SMILES code can be further specified to identify structural motifs that are relevant for analytical approaches, research on biosynthetic pathways, bioactivity-guided analysis, or to facilitate predictive science and modeling efforts on cyanobacterial metabolites. This database facilitates rapid identification of cyanobacterial metabolites from toxic blooms, research on the biosynthesis of cyanobacterial natural products, and the identification of novel natural products from cyanobacteria. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=125 SRC="FIGDIR/small/038703v1_ufig1.gif" ALT="Figure 1"> View larger version (35K): org.highwire.dtl.DTLVardef@3504f7org.highwire.dtl.DTLVardef@d92680org.highwire.dtl.DTLVardef@6ea103org.highwire.dtl.DTLVardef@10cd983_HPS_FORMAT_FIGEXP M_FIG C_FIG

bioinformatics