Biology subjects

Masuda, B.

Publications and source records attributed to Masuda, B..

4 recordsLinked to original sources

bioRxiv2026

Responses to novel food resources in the extinct-in-the-wild 'alala

One challenge of reintroduction programs is ensuring that captive individuals are prepared for life in the wild, including having the ability to forage on wild resources. Foraging proficiency can be especially challenging to foster in species with a wide dietary breadth or reliance on ephemerally available resources. A relatively unexplored obstacle to release readiness may be an animals hesitancy to approach or consume unfamiliar foods, i.e. their neophobia and dietary conservatism. In this study, we examined the responses of a conservation breeding population of the extinct-in-the-wild alal[a] (Corvus hawaiiensis), a dietary generalist, to novel and familiar native and non-native fruits. Birds were similarly willing to contact both novel and familiar fruits, suggesting little aversion to the presence and appearance of novel food items. However, birds showed a clear preference for contacting non-native fruits over native fruits, regardless of familiarity. Additionally, while birds were willing to contact novel items, they were less likely to consume novel native fruits, suggesting that dietary conservatism may limit incorporation of these resources in the wild. Finally, juvenile birds were less likely to approach the testing setup and contact items, suggesting that neophobia may constrain their exploration of novel environments and resources. We discuss the implications of alal[a] preferences for non-native foods and reluctance to consume novel native items for pre-release preparations and the goal of wild species recovery.

animal behavior and cognition↗

bioRxiv2026

Elevated recessive lethal frequencies drive hatching failure following near extinction in 'Alala, the Hawaiian crow

Near-extinction events impose severe genomic bottlenecks that can have lasting fitness consequences, yet the specific mechanisms involved remain poorly understood. Alal[a], the last remaining Hawaiian crow, narrowly avoided extinction when a conservation breeding program was initiated from just eight genetic founders. Although the conservation breeding program has since recovered to [~]120 birds, it remains plagued by egg hatching failure rates >50%. To investigate the impacts of this bottleneck on hatching failure and other fitness components, we generated a chromosome-level reference genome and resequenced 175 individuals, including 78 deceased embryos. Although long runs of homozygosity (ROH) >1Mb are abundant in Alal[a] (mean FROH=0.32), associations between FROH and measures of survival and reproduction, including egg failure, were weak or nonexistent. Instead, we identify two recessive lethal haplotypes that together account for nearly all of the excess hatching failure and have persisted in the population at high frequency (15-25%), hinting at impaired purifying selection. Eco-evolutionary simulation models demonstrate that these findings are expected for a species that has endured a severe population bottleneck and exhibits modest levels of pre-bottleneck heterozygosity. Our findings suggest that elevated recessive allele frequencies may be a broadly important consequence of population bottlenecks.

evolutionary biology↗

bioRxiv2021

Testing the maintenance of natural responses to survival-relevant calls in the conservation breeding population of a critically endangered corvid (Corvus hawaiiensis)

Vocal communication serves an important role in driving many animals social interactions and ultimately their survival. However, both the structure of and responses towards natural vocal behavior can be lost or subject to alteration under human care. Determining if animals in conservation breeding programs exhibit and respond appropriately to species-specific vocalizations is therefore important for ensuring their survival and persistence post-release. We tested whether endangered alal[a] (Corvus hawaiiensis), which are extinct in nature, have retained their natural responses to vocal calls that were previously linked to survival and reproduction in the wild. We conducted our studies on breeding populations derived from a small number of founding alal[a] maintained under human care since their extinction in the wild in 2002. We presented pairs of alal[a] with alarm, territorial intrusion, and two types of control playback calls (a non-threatening territorial maintenance call and a novel heterospecific call). Alal[a] were significantly more likely to approach the speaker following alarm call playback than other call types, and were more likely to respond to territorial intrusion calls with the same aggressive territorial calls. Males were more likely to make these aggressive calls than females, mirroring their roles in territory defense. We also found individual consistency in the level of vocal behavior response across all call types, indicating that some individuals are more vocal than others. These results are encouraging, showing that alal[a] exhibit relevant, species-specific behaviors despite generations under human care. They do illustrate, however, that not all individuals respond appropriately, so animals responses to vocal stimuli may be an important factor to consider in determining the release suitability of individuals. Significance StatementEffective communication is crucial to the survival of many animals, but can erode without natural selection. Therefore, testing the flexibility and maintenance of communication and vocal responses in contexts where animals are isolated from conspecifics or from survival consequences, such as in conservation breeding centers, can help determine species susceptibility to communication loss. We used playbacks of survival-related conspecific calls to test if alal[a] (Corvus hawaiiensis), retained species-specific responses to these calls after generations under human care. We found that birds maintained a species-level natural response, however these natural responses were not consistent across individuals, suggesting that some birds may not be well equipped to survive in the wild without additional training or care.

animal behavior and cognition↗

bioRxiv2018

A high-quality, long-read de novo genome assembly to aid conservation of Hawaii’s last remaining crow species

Genome-level data can provide researchers with unprecedented precision to examine the causes and genetic consequences of population declines, and to apply these results to conservation management. Here we present a high-quality, long-read, de novo genome assembly for one of the worlds most endangered bird species, the Alala. As the only remaining native crow species in Hawaii, the Alala survived solely in a captive breeding program from 2002 until 2016, at which point a long-term reintroduction program was initiated. The high-quality genome assembly was generated to lay the foundation for both comparative genomics studies, and the development of population-level genomic tools that will aid conservation and recovery efforts. We illustrate how the quality of this assembly places it amongst the very best avian genomes assembled to date, comparable to intensively studied model systems. We describe the genome architecture in terms of repetitive elements and runs of homozygosity, and we show that compared with more outbred species, the Alala genome is substantially more homozygous. We also provide annotations for a subset of immunity genes that are likely to be important for conservation applications, and we discuss how this genome is currently being used as a roadmap for downstream conservation applications.

genomics↗