Biology subjects

Mascher, F.

Publications and source records attributed to Mascher, F..

7 recordsLinked to original sources

bioRxiv2024

Population genomics and molecular epidemiology of wheat powdery mildew in Europe

Agricultural diseases are a major threat to sustainable food production. Yet, for many pathogens we know exceptionally little about their epidemiological and population dynamics, and this knowledge gap is slowing the development of efficient control strategies. Here we study the population genomics and molecular epidemiology of wheat powdery mildew, a disease caused by the biotrophic fungus Blumeria graminis forma specialis tritici (Bgt). We sampled Bgt for two consecutive years, 2022 and 2023, from 22 countries in Europe and surrounding regions, and compiled a genomic dataset of 415 Bgt isolates. We found one single epidemic unit in the north of Europe, consisting of a highly homogeneous population. Conversely, the south of Europe hosts smaller local populations which are less interconnected. In addition, we show that the population structure can be largely predicted by the prevalent wind patterns. We identified several loci that were under selection in the recent past, including fungicide targets and avirulence genes. Some of these loci are common between populations, while others are not, suggesting different local selective pressures. We reconstructed the evolutionary history of one of these loci, AvrPm17, coding for an effector recognized by the wheat receptor Pm17. We found evidence for a soft sweep on standing genetic variation. Multiple AvrPm17 haplotypes, which can partially escape recognition by Pm17, spread rapidly throughout the continent upon its introduction in the early 2000s. We also identified a new virulent variant, which emerged more recently and can evade Pm17 resistance altogether. Overall, we highlight the potential of genomic surveillance in resolving the evolutionary and epidemiological dynamics of agricultural pathogens, as well as in guiding control strategies.

evolutionary biology↗

bioRxiv2023

Soil chemical and microbial gradients determine accumulation of root exuded secondary metabolites and plant-soil feedbacks in the field

IntroductionHarnessing positive plant-soil feedbacks via crop rotations is a promising strategy for sustainable agriculture. Plants can influence soil properties including microbes by exuding specialized metabolites. However, the effects are often context dependent and variable. If and how local soil heterogeneity may explain this variation is unknown. Benzoxazinoids are specialized metabolites that are released in high quantities by cereals such as wheat and maize. Benzoxazinoids can alter rhizosphere microbiota and the performance of plants subsequently growing in the exposed soils and are thus an excellent model to study agriculturally relevant plant-soil feedbacks in the field, and to assess how soil factors affect their outcome. Materials & methodsTo understand the importance of local variation in soil properties on benzoxazinoid-mediated plant-soil feedbacks, we conditioned plots with wild-type maize and benzoxazinoid-deficient bx1 mutant plants in a grid pattern across an arable field. We then grew winter wheat across the entire field in the following season. We determined accumulation of benzoxazinoids, root-associated microbial communities, abiotic soil properties and wheat performance in each plot. We also determined benzoxazinoid conversion dynamics in a labelling experiment under controlled conditions, and then assessed associations between soil chemical variation and benzoxazinoid-mediated plant-soil feedbacks. ResultsAcross the field, we detected a marked gradient in soil chemical and microbial community composition. This gradient resulted in significant differences in benzoxazinoid accumulation. These differences were explained by differential benzoxazinoid degradation rather than exudation. Benzoxazinoid exudation modulated alpha diversity of root and rhizosphere bacteria and fungi during maize growth, but not during subsequent wheat growth, while the chemical fingerprint of benzoxazinoid accumulation persisted. Averaged across the field, we detected no significant feedback effects of benzoxazinoid conditioning on wheat performance and defence, apart from a transient decrease in biomass during vegetative growth. Closer analysis however, revealed pronounced feedback effects along the chemical and microbial gradient of the field, with effects gradually changing from negative to positive along the gradient. ConclusionOverall, this study revealed that plant-soil feedbacks differ in strength and direction within a field, and that this variation can be explained by standing chemical and microbial gradients, which strongly affect benzoxazinoid accumulation in the soil. Understanding within-field soil heterogeneity is crucial for the future exploitation of plant-soil feedbacks in sustainable precision agriculture.

plant biology↗

bioRxiv2023

Performance of a winter wheat composite cross population in two temperate agroforestry systems: a case study

In agroforestry systems (AFS), where environmental conditions are highly variable at small spatial scales, the use of uniform genetic material of a single cultivar commonly grown in monoculture cropping might not be optimal. However, the use of composite cross populations (CCPs) that contain an inherent genetic variability might be a promising approach to match the environmental variability created by trees in AFS. In this experimental trial, the performance of a CCP ( CC-2k) of winter wheat was compared to a commercial variety ( Wiwa) in a split-plot design in two AFS (Feusisberg, Wollerau) in Central Switzerland. The factor variety (p < 0.05) and the interactions of site and distance to tree (p < 0.05) and site and variety (p < 0.05) significantly affected wheat yield at the plot level. CC-2k and Wiwa yield (across all distances) amounted to 1.9 {+/-} 0.7 Mg ha-1 and 2.0 {+/-} 0.8 Mg ha-1, respectively, in Feusisberg and to 1.9 {+/-} 0.9 Mg ha-1 and 0.7 {+/-} 0.4 Mg ha-1, respectively, in Wollerau. Wiwa had a higher protein, Fe and Ca content than CC-2k. Therefore, while the CC-2k outperformed the commercial organic variety Wiwa in terms of yield in one of the two AFS, Wiwa outperformed CC-2k in terms of quality. The composite cross population might be better adapted to the heterogenous environment of agroforestry systems but fails to reach the high-quality product of modern elite cultivars. Further improvements in terms of quality might make CCPs highly interesting for diversified agricultural systems with larger environmental heterogeneity than common monoculture cropping systems.

plant biology↗

bioRxiv2022

Plant secondary metabolite-dependent plant-soil feedbacks can improve crop yield in the field

Plant secondary metabolites that are released into the rhizosphere alter biotic and abiotic soil properties, which in turn affect the performance of other plants. How such plant-soil feedbacks affect agricultural productivity and food quality in crop rotations is unknown. Here, we assessed the impact of maize benzoxazinoids on the performance, yield and food quality of three winter wheat varieties in a two-year field experiment. Following maize cultivation, we detected benzoxazinoid-dependent chemical and microbial fingerprints in the soil. The chemical fingerprint was still visible during wheat growth, while the microbial fingerprint was no longer detected. Benzoxazinoid soil conditioning by wild-type maize led to increased wheat emergence, tillering, growth and biomass compared to soil conditioning by bx1 mutant plants. Weed cover remained unaffected, while insect damage decreased in a subset of varieties. Wheat yield was increased by over 4% without a reduction in grain quality across varieties. This improvement was directly associated with increased germination and tillering. Taken together, our experiments demonstrate that plant secondary metabolites can increase yield via plant-soil feedbacks under agronomically realistic conditions. If this phenomenon holds across different soils and environmental conditions, optimizing plant root exudation could be a powerful, genetically tractable strategy to enhance crop yields without additional inputs.

plant biology↗

bioRxiv2020

Histopathological aspects of induced resistance by Pseudomonas protegens CHA0 and β-aminobutyric acid in wheat against Puccinia triticina

After perception of specific biotic or abiotic stimuli, such as root colonization by rhizobacteria or selected chemicals, plants are able to enhance their basal resistance against pathogens. Due to its sustainability, such induced resistance is highly valuable for disease management in agriculture. Here we study an example of resistance against wheat-leaf rust induced by Pseudomonas protegens CHA0 (CHA0) and {beta}-aminobutyric acid (BABA), respectively. Seed dressing with CHA0 reduced the number of sporulating pustules on the leaves and the expression of resistance was visible as necrotic or chlorotic flecks. Moreover, a beneficial effect of CHA0 on growth was observed in wheat seedlings challenged or not with leaf rust. BABA was tested at 10, 15 and 20 mM and a dose-dependent reduction of leaf rust infection was observed with the highest level of protection at 20 mM. However, BABA treatment repressed plant growth at 20 mM. Balancing between BABA-impact on plant growth and its protective capacity, we selected 15 mM as suitable concentration to protect wheat seedlings against leaf rust with the least impact on vegetative growth. To understand the mechanisms behind the observed resistance, we have studied the histological aspects of the fungal infection process. Our results showed that the p re-entry process was not affected by the two resistance inducers. However, both treatments reduced fungal penetration and haustoria formation. The timing and the amplitude of the resistance reactions was different after bacterial or chemical induction, leading to different levels of resistance to leaf rust. During fungal colonization of the tissues, a high deposition of callose and the accumulation of H2O2 in both CHA0-and BABA-treated plants pointed to an important contribution to resistance.

plant biology↗

bioRxiv2020

Efficiency of biological and chemical inducers for controlling Septoria tritici leaf blotch (STB) on wheat (Triticum aestivum L.)

The hemibiotrophic fungus Zymoseptoria tritici is the causative agent of Septoria tritici leaf blotch (STB) disease of wheat (Triticum aestivum L.), the economically most damaging disease of wheat in Europe. Today, ecofriendly plant protection methods compatible with sustainable agriculture are strongly desirable. Here, we applied the two chemical inducers {beta}-aminobutyric acid (BABA) and benzo-(1,2,3)-thiadiazole-7-carbothioic acid S-methyl ester (BTH) and the two biotic inducers Pseudomonas protegens CHA0 (CHA0) and P. chlororaphis PCL1391 (PCL) on the roots of wheat seedlings in order to test their ability to induce resistance against STB. At 21 days after inoculation, only plants treated with BABA showed a smaller area covered by lesions and less pycnidia compared to the untreated control plants. We evaluated spore germination and fungal development on inoculated wheat leaves at early infection stages using calcofluor white staining. Overall, spores of Z. tritici germinated less on plants soil-drenched with BABA and BTH and their hyphal growth was significantly delayed. On the contrary, CHA0 and PCL seed treatments did not affect fungal growth in wheat leaves. In conclusion, BABA efficiently enhanced plant resistance to Z. tritici, BTH delayed fungal development at early stages while the two biotic inducers did not enhance resistance against STB disease.

plant biology↗

bioRxiv2017

Ranking quantitative resistance to Septoria tritici blotch in elite wheat cultivars using automated image analysis

Quantitative resistance is likely to be more durable than major gene resistance for controlling Septoria tritici blotch (STB) on wheat. Earlier studies hypothesized that resistance affecting the degree of host damage, as measured by the percentage of leaf area covered by STB lesions, is distinct from resistance that affects pathogen reproduction, as measured by the density of pycnidia produced within lesions. We tested this hypothesis using a collection of 335 elite European winter wheat cultivars that was naturally infected by a diverse population of Zymoseptoria tritici in a replicated field experiment. We used automated image analysis (AIA) of 21420 scanned wheat leaves to obtain quantitative measures of conditional STB intensity that were precise, objective, and reproducible. These measures allowed us to explicitly separate resistance affecting host damage from resistance affecting pathogen reproduction, enabling us to confirm that these resistance traits are largely independent. The cultivar rankings based on host damage were different from the rankings based on pathogen reproduction, indicating that the two forms of resistance should be considered separately in breeding programs aiming to increase STB resistance. We hypothesize that these different forms of resistance are under separate genetic control, enabling them to be recombined to form new cultivars that are highly resistant to STB. We found a significant correlation between rankings based on automated image analysis and rankings based on traditional visual scoring, suggesting that image analysis can complement conventional measurements of STB resistance, based largely on host damage, while enabling a much more precise measure of pathogen reproduction. We showed that measures of pathogen reproduction early in the growing season were the best predictors of host damage late in the growing season, illustrating the importance of breeding for resistance that reduces pathogen reproduction in order to minimize yield losses caused by STB. These data can already be used by breeding programs to choose wheat cultivars that are broadly resistant to naturally diverse Z. tritici populations according to the different classes of resistance.

plant biology↗