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Martinez, T.

Publications and source records attributed to Martinez, T..

12 recordsLinked to original sources

High-throughput screening in hiPSC-cardiac models reveals cardiomyocyte-specific cell cycle regulatory mechanisms

Introductory ParagraphMultiple regulatory mechanisms govern cardiomyocyte proliferation including epigenetic modifications, metabolism and mechanical load. However, it is unclear whether such mechanisms can be pharmacologically targeted to induce cardiomyocyte proliferation without affecting other cell types. Here, we develop a dual-reporter (TNNT2eGFP; PCNAmScarlet-I) and a high-throughput image-based pipeline in human induced pluripotent stem cell (hiPSC)-derived cardiomyocytes, with counter screening in non-myocytes, to identify compounds that selectively promote cardiomyocyte proliferation without affecting other cell types. We identify the PIM kinase inhibitor GDC-0339 as a cardiomyocyte-selective pro-proliferative compound. GDC-0339 induced proliferation of hiPSC-derived cardiomyocytes without activity in non-myocytes, non-cardiac fibroblasts or epithelial cells. Phosphoproteomic profiling of GDC-0339 in cardiomyocytes and non-cardiac fibroblasts revealed a cardiomyocyte-specific mechanism of action involving sarcomere disassembly via remodelling of the F-actin cytoskeleton and metabolic reprogramming to anaerobic metabolism via Pyruvate Dehydrogenase Kinases (PDKs). Thus, we uncover cardiomyocyte-specific mechanisms governing the cell cycle that are potentially druggable.

cell biology↗

Behavioral metabolic suppression confounds thermal performance estimates and climate vulnerability assessments in a marine ectotherm

O_LIThermal performance curves (TPCs) predict species vulnerability to climate change, but standard respirometry assumes that measured oxygen consumption reflects physiological state. Sessile invertebrates that retract their tentacles and contract under thermal stress violate this assumption, with unmeasured consequences for thermal limit estimates. C_LIO_LIWe tested this behavioral confound in an undescribed cold-water intertidal anemone (Urticina sp.) in the Northwest Atlantic by integrating a negative binomial encounter-rate regression, a maximum entropy species distribution model (both from effort-corrected iNaturalist data), and closed-chamber respirometry across seven temperatures (1-30{degrees}C). C_LIO_LIThe strongest distributional predictors were cloud cover and coastal urbanization, with a weaker association with winter minimum SST; direct evidence for warm-edge thermal limitation came from the experiment. Anemone expansion state was variable and without a clear trend across the coldest treatments, declining above 20{degrees}C, and collapsing at the 30{degrees}C treatment, which proved lethal. C_LIO_LIStandard TPC models extrapolated the thermal maximum far beyond the lethal bracket. A Bayesian multiplicative model that separated physiology from behavior showed that physiology continued to track temperature while expansion state declined above 20{degrees}C; a fully expanded anemone respired about twice as fast as a fully closed one at the same temperature. The decline in measured respiration is therefore both behavioral and physiological, and disentangling the two requires recording expansion state alongside oxygen consumption. C_LIO_LIBecause a closed anemone cannot feed or exchange gases, the ecologically relevant thermal limit is the temperature at which the animal can no longer maintain its normal expanded posture, not a curve-fitted thermal maximum. That behavioral threshold leaves warm-edge populations within a few degrees of functional thermal failure. C_LIO_LIFuture thermal physiology studies of organisms capable of modulating oxygen consumption through behavior should incorporate quantitative behavioral covariates to separate physiological from behavioral components of the metabolic response. C_LI ResumeO_LILes courbes de performance thermique (CPT) predisent la vulnerabilite des especes au changement climatique, mais la respirometrie classique postule que la consommation doxygene mesuree reflete letat physiologique. Les invertebres sessiles qui retractent leurs tentacules et se contractent sous stress thermique ne satisfont pas cette hypothese, avec des consequences non quantifiees sur lestimation des limites thermiques. C_LIO_LINous avons teste ce facteur de confusion comportemental chez une anemone intertidale deau froide non decrite (Urticina sp.) de lAtlantique Nord-Ouest, en combinant une regression binomiale negative du taux de rencontre, un modele de distribution despeces a maximum dentropie (tous deux sur donnees iNaturalist corrigees de leffort) et une respirometrie en chambre close a sept temperatures (1 a 30 {degrees}C). C_LIO_LILes principaux predicteurs etaient la couverture nuageuse et lurbanisation cotiere, lassociation au minimum hivernal de temperature de surface de la mer etant plus faible. La preuve directe dune limitation thermique en bordure chaude provient de lexperience. Letat dexpansion variait sans tendance nette aux traitements les plus froids, diminuait au-dela de 20 {degrees}C et seffondrait a 30 {degrees}C, traitement qui sest revele letal. C_LIO_LILes CPT classiques ont extrapole le maximum thermique bien au-dela de lintervalle letal. Un modele bayesien multiplicatif separant physiologie et comportement a montre que la physiologie suivait toujours la temperature alors que letat dexpansion diminuait au-dela de 20 {degrees}C; a temperature egale, une anemone pleinement epanouie respirait environ deux fois plus quune anemone pleinement fermee. La baisse mesuree est donc a la fois comportementale et physiologique, et les dissocier exige denregistrer letat dexpansion avec la consommation doxygene. C_LIO_LIUne anemone fermee ne pouvant ni se nourrir ni assurer ses echanges gazeux, la limite thermique ecologiquement pertinente est la temperature a laquelle lanimal ne peut plus maintenir son expansion normale, et non un maximum issu dun ajustement de courbe. Ce seuil comportemental place les populations de bordure chaude a quelques degres de la defaillance thermique fonctionnelle. C_LIO_LILes futures etudes de physiologie thermique sur des organismes capables de moduler leur consommation doxygene par leur comportement devraient integrer des covariables comportementales quantitatives pour separer les composantes physiologique et comportementale de la reponse metabolique. C_LI

ecology↗

Electronic Cigarette Aerosol Exposure Induces Airway Remodeling in 3D Human Tracheobronchial Epithelial Tissues: From Goblet Cell Hyperplasia to Squamous Metaplasia

Electronic cigarette (EC) aerosols are increasingly recognized for their disruptive effects on airway physiology, yet the temporal progression of epithelial remodeling remains poorly characterized. While squamous metaplasia, mucin hypersecretion, and ciliary dysfunction are hallmark features of smoking-related airway disease, analogous data for EC exposure are limited. To address this gap, we employed a 3D human tracheobronchial epithelial tissue (hTET) model derived from airway basal stem cells and exposed it daily to NJOY ACE "Classic Tobacco" aerosols (1 or 5 puffs) or clean air for 1, 2, or 3 weeks. Remodeling was assessed via immunolabeling and Western blot analysis. MUC5AC expression revealed a transient hypersecretory response, peaking at week 2 and declining by week 3. Multiparametric analysis demonstrated progressive squamous remodeling: early ciliary loss and involucrin upregulation emerged by week 1, with severity increasing in a puff-dependent manner. By week 2, tissues exhibited marked ciliary depletion, altered epithelial thickness, horizontal nuclear reorientation, and elevated involucrin. At week 3, both exposure groups developed a squamous metaplasia phenotype, characterized by involucrin-positive squamous cells replacing ciliated cells. Quantitative analysis confirmed sustained involucrin elevation, with the 1-puff group reaching levels comparable to the 5-puff group by week 3. These findings delineate a sequential pathological trajectory initiated by EC aerosols, progressing from transient goblet cell activation to squamous metaplasia. This human-relevant model underscores the potential for repeated low-level EC exposure to induce airway epithelial remodeling and pathology.

pharmacology and toxicology↗

Mevalonate Biosynthesis is a Metabolic Vulnerability of Gemcitabine-resistant Pancreatic Cancer

Pancreatic ductal adenocarcinoma (PDAC) is a lethal malignancy with a devastating prognosis. Gemcitabine, a pyrimidine anti-metabolite, is a cornerstone in PDAC therapy. However, resistance remains a major hurdle in clinical care. Resistance can arise from microenvironmental metabolites or through direct metabolic reprogramming of pancreatic cancer cells. Here, we generated PDAC models of acquired gemcitabine resistance to determine the relationship between these mechanisms. We observed that physiological levels of exogenous pyrimidines have a diminished ability to impact gemcitabine response in PDAC cells with acquired resistance. This occurs as the metabolic reprogramming of PDAC cells in response to gemcitabine treatment forces a suppression of the pyrimidine salvage pathway. Importantly, this metabolic rewiring renders gemcitabine-resistant PDAC cells highly susceptible to inhibition of the rate limiting enzyme of the mevalonate biosynthesis pathway, 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMGCR), using statins. Notably, statin treatment inhibits the growth of gemcitabine-resistant tumors in immunocompetent mouse models. Through metabolite rescue experiments, we identified geranylgeranyl pyrophosphate as the critical metabolite lost during statin treatment, resulting in reduced protein geranylation in PDAC cells. Finally, as downregulation of the HMGCR is gradually acquired during gemcitabine resistance, we observed that HMGCR expression predicts patient response to gemcitabine. Collectively, these data demonstrate that the mevalonate biosynthesis pathway represents a promising therapeutic target in gemcitabine resistance and may serve as a biomarker to stratify treatment selection in PDAC patients.

cancer biology↗

Comparative Analysis of Primary and Liver Fibroblasts Reveals MET as a Potent Target in Pancreatic Cancer Metastasis

The tumor microenvironment drives many malignant features of pancreatic ductal adenocarcinoma (PDAC). The fibroblasts within pancreatic tumors promote tissue remodeling, immune suppression, and resistance to therapy. However, the interactions between stromal populations and pancreatic cancer cells are less understood in the liver, the most frequent site of PDAC metastasis. To address this, we employ single cell transcriptomics to compare primary pancreatic vs. liver PDAC lesions. Here, we identify the expression of hepatocyte growth factor (HGF) in fibroblasts and its receptor MET in cancer cells are both markedly increased in the PDAC liver niche. Using functional assays, we validate that mitogenic MET signaling is activated in PDAC cells by liver-derived fibroblasts. Importantly, the inhibition of MET signaling leads to reduced tumor growth in immune competent mouse models. Collectively, our data demonstrates that liver stromal-epithelial crosstalk networks engage in signaling pathways distinct from primary pancreatic tumors, highlighting opportunities to develop new treatments for metastatic disease.

cancer biology↗

Unraveling the Toxicological Effects of Hydroxyacetone - A Reaction Product in Electronic Cigarette Aerosols

Hydroxyacetone has been detected at high concentrations (up to [~]12 mg/mL) in electronic cigarette (EC) aerosols, including those derived from products associated with adverse health effects. Given the limited understanding of its inhalation toxicology, we investigated hydroxyacetones impact on human airway epithelial cells. Acute exposures at the air-liquid interface (ALI) using 3D EpiAirway tissues--a surrogate for human tracheobronchial epithelium--were analyzed via proteomics. Differential expression analysis identified numerous affected proteins, with enrichment pointing to alterations in mitochondrial function and actin cytoskeletal disruption as major targets. Ingenuity Pathway Analysis (IPA) highlighted "Mitochondrial Dysfunction" and "NRF2-Mediated Oxidative Stress" among top toxicological categories, and "Nuclear Cytoskeletal Signaling" as a key canonical pathway. To validate and extend these findings, submerged cultures of BEAS-2B cells were exposed to hydroxyacetone (0.01-10 mg/mL) and assessed for mitochondrial activity, oxidative stress, and F-actin integrity. At 1 mg/mL, mitochondrial membrane potential and reactive oxygen species (ROS) increased, with elevated hydrogen peroxide detected in the culture medium. At 10 mg/mL, mitochondrial activity declined significantly, accompanied by cell rounding and apoptotic blebbing within 2 hours. F-actin destabilization occurred at 1, 3.33, and 10 mg/mL, with cytoplasmic and perinuclear filaments more affected than cortical actin. Findings from ALI and submerged models were concordant, supporting hydroxyacetone-induced mitochondrial stress, oxidative damage, and cytoskeletal disruption. These results suggest that hydroxyacetone concentrations found in EC aerosols may contribute to respiratory toxicity and warrant further investigation.

pharmacology and toxicology↗

Ongoing thoughts at rest reflect functional brain organization and behavior

Resting-state functional connectivity (rsFC)--brain connectivity observed when people rest with no external tasks--predicts individual differences in behavior. Yet, rest is not idle; it involves streams of thoughts. Are these ongoing thoughts reflected in FC and do they contribute to the relationship between rsFC and behavior? To test this question, we developed an annotated rest paradigm where participants rated and verbally described their thoughts after each rest period during functional MRI (N = 60). Our findings revealed rich and idiosyncratic thoughts across individuals. Similarity in thoughts was associated with more similar FC patterns within and across individuals. In addition, both thought ratings and topics could be decoded from FC. Furthermore, neuromarkers of these thoughts generalized to unseen individuals in the Human Connectome Project dataset (N = 908), where decoded thought patterns during rest predicted positive vs. negative trait-level individual differences. Together, our findings reveal that ongoing thoughts at rest are reflected in brain dynamics and these network patterns predict everyday cognition and experiences. Understanding subjective in-scanner experiences is thus crucial in characterizing the relationship between individual differences in functional brain organization and behavior.

neuroscience↗

Does Vaping Increase the Likelihood of SARS-CoV-2 Infection? Paradoxically Yes and No

Data on the relationship between electronic cigarettes (ECs) and SARS-CoV-2 infection are limited and contradictory. Evidence indicates that EC aerosols or nicotine increase ACE2, SARS-CoV-2 virus receptors, which increase virus binding and susceptibility. Our objectives were to determine if EC aerosols increased SARS-CoV-2 infection of human bronchial epithelial cells and to identify the causative chemical(s). A 3D organotypic model (EpiAirway) in conjunction with air liquid interface (ALI) exposure was used to test the effects of aerosols produced from JUUL "Virginia Tobacco" and BLU ECs, or individual chemicals (nicotine, propylene glycol, vegetable glycerin (PG/VG), and benzoic acid) on infection using SARS-CoV-2 pseudoparticles. Exposure of EpiAirway to JUUL aerosols increased ACE2, while BLU and lab-made EC aerosols containing nicotine increased ACE2 levels and TMPRSS2 activity, a spike protease that enables viral-cell fusion. Pseudoparticle infection of EpiAirway increased with aerosols produced from PG/VG, PG/VG plus nicotine, or BLU ECs. JUUL EC aerosols did not increase infection above controls. The baseline level of infection in JUUL treated aerosol groups was attributed to benzoic acid, which mitigated the enhanced infection caused by PG/VG or nicotine. The benzoic acid protection from enhanced infection continued at least 48 hours after exposure. TMPRSS2 activity was significantly correlated with e-liquid pH, which in turn was significantly correlated with infection, with lower pH blocking PG/VG and nicotine-induced-enhanced infection. While ACE2 levels increased in EpiAirway tissues exposed to EC aerosols, infection depended on the ingredients of the e-liquids. PG/VG and nicotine enhanced infection, an effect that was mitigated by benzoic acid.

cell biology↗

New Insights into How JUUL Electronic Cigarette Aerosols and Aerosol Constituents Affect SARS-CoV-2 Infection of Human Bronchial Epithelial Cells

BackgroundThe relationship between the use of tobacco products and SARS-CoV-2 infection is poorly understood and controversial. Most studies have been done with tobacco cigarettes, while few have examined the effect of electronic cigarettes (ECs) on SARS-CoV-2 infection. We tested the hypothesis that EC fluids and aerosols with high concentrations of nicotine promote SARS-COV-2 infection by increasing viral entry into human respiratory epithelial cells. MethodsResponses of BEAS-2B cells to authentic JUUL aerosols or their individual constituents (propylene glycol (PG)/vegetable glycerin (VG) and nicotine) were compared using three exposure platforms: submerged culture, air-liquid-interface (ALI) exposure in a cloud chamber, and ALI exposure in a Cultex(R) system, which produces authentic heated EC aerosols. SARS-CoV-2 infection machinery was assessed using immunohistochemistry and Western blotting. Specifically, the levels of the SARS-CoV-2 receptor ACE2 (angiotensin converting enzyme 2) and a spike modifying enzyme, TMPRSS2 (transmembrane serine protease 2), were evaluated. Following each exposure, lentivirus pseudoparticles with spike protein and a green-fluorescent reporter were used to test viral penetration and the susceptibility of BEAS-2B cells to infection. ResultsNicotine, EC fluids, and authentic JUUL aerosols increased both ACE2 levels and TMPRSS2 activity, which in turn increased viral particle entry into cells. While most data were in good agreement across the three exposure platforms, cells were more responsive to treatments when exposed at the ALI in the Cultex system, even though the exposures were brief and intermittent. In the Cultex system, PG/VG, PG/VG/nicotine, and JUUL aerosols significantly increased infection above clean air controls. However, both the PG/VG and JUUL treatments were significantly lower than nicotine/PG/VG. PG/VG increased infection only in the Cultex(R) system, which produces heated aerosol. ConclusionOur data are consistent with the conclusion that authentic JUUL aerosols or their individual constituents (nicotine or PG/VG) increase SARS-CoV-2 infection. The strong effect produced by nicotine was modulated in authentic JUUL aerosols, demonstrating the importance of studying mixtures and aerosols from actual EC products. These data support the idea that vaping increases the likelihood of contracting COVID-19.

cell biology↗

A community-driven roadmap to advance research on translated open reading frames detected by Ribo-seq

Ribosome profiling (Ribo-seq) has catalyzed a paradigm shift in our understanding of the translational vocabulary of the human genome, discovering thousands of translated open reading frames (ORFs) within long non-coding RNAs and presumed untranslated regions of protein-coding genes. However, reference gene annotation projects have been circumspect in their incorporation of these ORFs due to uncertainties about their experimental reproducibility and physiological roles. Yet, it is indisputable that certain Ribo-seq ORFs make stable proteins, others mediate gene regulation, and many have medical implications. Ultimately, the absence of standardized ORF annotation has created a circular problem: while Ribo-seq ORFs remain unannotated by reference biological databases, this lack of characterisation will thwart research efforts examining their roles. Here, we outline the initial stages of a community-led effort supported by GENCODE / Ensembl, HGNC and UniProt to produce a consolidated catalog of human Ribo-seq ORFs.

genomics↗

The histone deacetylase complex MiDAC regulates a neurodevelopmental gene expression program

MiDAC is a recently identified histone deacetylase (HDAC) complex. While other HDAC complexes have been implicated in neurogenesis, the physiological role of MiDAC remains unknown. Here, we show that MiDAC constitutes an important regulator of neural differentiation. We demonstrate that MiDAC functions as a modulator of a neurodevelopmental gene expression program and binds to important regulators of neurite outgrowth. On the one hand, MiDAC upregulates gene expression by mediating the removal of H4K20ac on the promoters and enhancers of pro-neural genes such as those encoding the secreted ligands SLIT3 and NETRIN1 (NTN1). Conversely, MiDAC inhibits gene expression by reducing H3K27ac on promoter-proximal and -distal elements of negative regulators of neurogenesis. Furthermore, loss of MiDAC results in neurite outgrowth defects that can be rescued by supplementation with SLIT3 and/or NTN1. These findings indicate a crucial role for MiDAC in regulating the ligands of the SLIT3 and NTN1 signaling axes to ensure the proper integrity of neurite development.

molecular biology↗

Lack of phenotypic variation in larval utilization of pea aphids in populations of the ladybeetle Hippodamia convergens

The convergent lady beetle (Hippodamia convergens) is a generalist natural enemy that is utilized extensively in augmentative biological control across the United States. Recent studies have pointed to both genetic and phenotypic differences in Western (California) versus Eastern (Kansas) populations of the species. Here we investigate (1) genetic population structure, and (2) phenotypic differences in the utilization of pea aphids at temperatures that resemble the Western United States in (a) Eastern versus Western populations, (b) F1 Eastern X Western hybrids versus their progenitor populations, and investigate the effects of interaction between (c) Eastern and Western populations. We found no differences in final pupal weight, or the net weight gain ratio through larval development from the third instar to pupal stage, despite genetic population structure. Our study points towards plastic response and effectiveness in feeding phenotypes of Eastern and Western populations of H. convergens, and the absence of hybrid vigor and heterozygote advantages in hybrids.

ecology↗