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Marsili, M.

Publications and source records attributed to Marsili, M..

2 recordsLinked to original sources

Finding informative neurons in the brain using Multi-Scale Relevance

We propose a metric - called Multi-Scale Relevance (MSR) - to score neurons for their prominence in encoding for the animals behaviour that is being observed in a multi-electrode array recording experiment. The MSR assumes that relevant neurons exhibit a wide variability in their dynamical state, in response to the external stimulus, across different time scales. It is a non-parametric, fully featureless indicator, in that it uses only the time stamps of the firing activity, without resorting to any a priori covariate or invoking any specific tuning curve for neural activity. We test the method on data from freely moving rodents, where we found that neurons having low MSR tend to have low mutual information and low firing sparsity across the correlates that are believed to be encoded by the region of the brain where the recordings were made. In addition, neurons with high MSR contain significant information on spatial navigation and allow to decode spatial position or head direction as efficiently as those neurons whose firing activity has high mutual information with the covariate to be decoded.

neuroscience

Translating ceRNA susceptibilities into correlation functions

Competition to bind microRNAs induces an effective positive crosstalk between their targets, therefore known as competing endogenous RNAs or ceRNAs. While such an effect is known to play a significant role in specific situations, estimating its strength from data and, experimentally, in physiological conditions appears to be far from simple. Here we show that the susceptibility of ceRNAs to different types of perturbations affecting their competitors (and hence their tendency to crosstalk) can be encoded in quantities as intuitive and as simple to measure as correlation functions. We confirm this scenario by extensive numerical simulations and validate it by re-analyzing PTENs crosstalk pattern from TCGA breast cancer database. These results clarify the links between different quantities used to estimate the intensity of ceRNA crosstalk and provide new keys to analyze transcriptional datasets and effectively probe ceRNA networks in silico.

systems biology