bioRxiv Science⌕ Search

Biology subjects

Marroquin, J. A. M.

Publications and source records attributed to Marroquin, J. A. M..

2 recordsLinked to original sources

GENETIC, MORPHOLOGICAL, AND PHYTOCHEMICAL DIFFERENTIATION OF CARNAVAL - A NEW HOP CULTIVAR ADAPTED TO TROPICAL ENVIRONMENT

AO_SCPLOWBSTRACTC_SCPLOWThe global hops market generates approximately US$8 billion annually, primarily driven by beer production, the worlds most consumed beverage. Despite this global demand, hop cultivation remains concentrated in temperate regions. Brazil, the third-largest beer consumer, imports over 99% of its hops. This study aimed to technically validate a new tropicalized hop cultivar, "Carnaval," developed over six years of breeding and genetic improvement to adapt the crop to Brazilian conditions. A comparative analysis was conducted between Carnaval and two commercial varieties, Comet and Cascade, evaluating morphological traits, production potential, phytochemical composition via GC-MS, and genotyping using 10,541 SNP markers obtained through dd-GBS on the Illumina(R) NextSeq 1000/2000 platform. Carnaval exhibited clear genotypic and phenotypic distinctiveness, with notable differences in cone, leaf, and branch morphology, as well as in alpha (14.0%) and beta (6.9%) acid content and essential oil concentration (0.61%), comprising over 35 components--mainly myrcene, -humulene, selinene, and caryophyllene. Productivity reached 478 kg/ha, comparable to commercial cultivars. Genetic analyses revealed high diversity (HS = 0.35), and population structure showed Carnaval grouping with its female parent Zeus but with distinct genomic characteristics. These findings confirm Carnavals unique identity and its adaptation to tropical conditions, making it a promising alternative for domestic hop production in Brazil.

plant biology↗

First chromosome scale genome of Acrocomia aculeata

The Arecaceae family comprises economically, and ecologically significant palm species widely distributed across tropical and subtropical regions. Among them, Acrocomia aculeata, commonly known as Macauba, has gained attention due to its high oil yield, environmental adaptability, and potential applications in sustainable agriculture and bioenergy production. This study presents the first chromosome scale genome assembly of A. aculeata and the first reference genome of the genus, using Oxford Nanopore Technologies sequencing, PacBio HiFi and Hi-C proximity ligation data. The genome covers 1.94 Gbp in the 15 pseudochromosomes, with N50 of 143.43 Mbp, achieving a base quality (QV) of 76.4 and a k-mer completeness of 90.58% of PacBio HiFi data, with k=21. Interspersed repetitive regions represent 77.36% of the total genome, with long terminal repeat (LTRs) accounting for 54.98%. A total of 28.215 protein-coding genes were predicted. The genome was validated with BUSCO, achieving a completeness of 98.9% for predicted proteins. The first chromosome scale genome of Macauba provide new insights and breakthroughs for studies of conservation genomics and plant breeding programs.

genomics↗