Biology subjects

Marchi, A. J.

Publications and source records attributed to Marchi, A. J..

2 recordsLinked to original sources

bioRxiv2026

Alzheimer's Disease Risk Allele APOE4 Interacts with Arsenic Exposure to Drive Microglial Dysfunction

Alzheimers disease (AD) is influenced by both genetic risk and environmental exposures, but how these factors interact in human microglia remains unclear. Here, we investigate whether the late-onset AD risk allele APOE4 impacts microglial vulnerability to arsenite exposure. To that end, we used CRISPR/Cas9 to generate an isogenic APOE4+/+ iPSC-derived transcription factor-induced microglia-like cells (iTFM). We demonstrate that APOE4+/+ iTFM exhibit decreased survival following arsenite exposure, as evidenced by a lower LC50 compared to APOE3+/+ controls. Transcriptomic profiling identified arsenite concentration as the primary driver of gene expression changes, while genotype contributed a secondary, distinct component of the response. Weighted gene co-expression network analysis revealed genotype-dependent modules enriched for phagocytic and oxidative stress pathways, including KEAP1-NFE2L2 signaling. These transcriptomic changes were further supported by functional assays. APOE4+/+ iTFM had a high proportion of phagocytic cells and altered mitochondrial phenotypes including increased mitochondrial mass, reduced membrane potential, and reduced superoxide production, all of which were further perturbed by low dose arsenite exposure. These results support a gene-environment interaction-dependent increase in microglial vulnerability via reshaping of transcriptional and functional stress responses, and provide a human cell-based framework for studying environmentally mediated microglial contributions to AD.

neuroscience↗

bioRxiv2025

EBSn, a robust synthetic reporter for monitoring ethylene responses in plants

Ethylene is a gaseous plant hormone that controls a wide array of physiologically relevant processes, including plant responses to biotic and abiotic stress, and induces ripening in climacteric fruits. To monitor ethylene in plants, analytical methods, phenotypic assays, gene expression analysis, and transcriptional or translational reporters are typically employed. In the model plant Arabidopsis, two ethylene-sensitive synthetic transcriptional reporters have been described, 5xEBS:GUS and 10x2EBS-S10:GUS. These reporters harbor a different type, arrangement, and number of homotypic cis-elements in their promoters and thus may recruit the ethylene master regulator EIN3 in the context of alternative transcriptional complexes. Accordingly, the patterns of GUS activity in these transgenic lines differ and neither of them encompasses all plant tissues even in the presence of saturating levels of exogenous ethylene. Herein, we set out to develop and test a more sensitive version of the ethylene-inducible promoter that we refer to as EBSnew (abbreviated as EBSn). EBSn leverages a tandem of ten non-identical, natural copies of a novel, dual, everted, 11bp-long EIN3-binding site, 2EBS(-1). We show that in Arabidopsis, EBSn outperforms its predecessors in terms of its ethylene sensitivity, having the capacity to monitor endogenous levels of ethylene and displaying more ubiquitous expression in response to the exogenous hormone. We demonstrate that the EBSn promoter is also functional in tomato, opening new avenues to manipulating ethylene-regulated processes, such as ripening and senescence, in crops.

plant biology↗