Biology subjects

Mandal, R.

Publications and source records attributed to Mandal, R..

12 recordsLinked to original sources

bioRxiv2026

More fruits, more frugivores, but not necessarily more visits: findings from two tropical plant-avian frugivore communities

Fruit resource availability can influence the local abundance of avian frugivores through bottom-up regulation, but whether greater resource availability translates into higher visitation rates to fruiting trees remains poorly understood. Greater fruit availability could increase visitation by supporting larger frugivore populations, or reduce visitation to individual trees if increases in frugivore abundance are not proportionate to those in fruit availability or if frugivores distribute their foraging effort. Understanding these relationships can provide insights into the relative role of abundance and trait-based mechanisms in structuring plant-frugivore communities. We compared fruit availability, avian frugivore abundance, and frugivore visitation rates on fruiting trees across two protected wet tropical forest sites: Anamalai Tiger Reserve in the Western Ghats and Namdapha Tiger Reserve in the Eastern Himalaya. Specifically, we quantified the availability of bird-consumed fruits across one-ha patches, estimated local abundances of major frugivore groups, and tested whether visitation rates on individual fruiting trees were related to frugivore abundance, body mass, and degree of frugivory. We found that small-seeded fruit availability was significantly higher in Anamalai than in Namdapha. Local abundances of several relatively small-bodied frugivore groups, including bulbuls, barbets, fairy-bluebirds, and mynas, were also higher in Anamalai. However, visitation rates of several frugivore groups on individual fruiting trees were higher in Namdapha. Visitation rates across all avian frugivore species were associated with frugivore abundances only in Anamalai, and not associated with body mass or degree of frugivory in either site. Thus, although greater fruit availability was likely associated with higher frugivore abundance, this increase in abundance did not consistently translate into higher visitation rates at individual fruiting trees, which provides some support for the resource dilution hypothesis. Our results highlight the importance of considering fruit resource availability and frugivore abundance when examining variation in tropical plant-frugivore interactions.

ecology↗

bioRxiv2026

Age-related differences in metabolome composition in a healthy pediatric population: A pilot analysis

Metabolic profiling of biofluids provides a comprehensive overview of physiological processes occurring at the molecular, cellular, tissue, and organ levels. Accounting for age-related variation in the metabolome is critical to accurately interpret these effects in blood-based metabolomics research. In this study, we sought to characterize the blood metabolome of healthy pediatric patients and assess whether metabolite concentrations differ across age groups and stages of sexual maturation. A total of 44 plasma samples from individuals aged 0-19 years were analyzed using a targeted quantitative metabolomics approach, combining direct injection with reverse-phase liquid chromatography mass spectrometry. Samples were stratified by age: infants (0-2 years), pre-teens (10-12 years), and post-pubertal adolescents (16-19 years). Asymmetric dimethylarginine, carnosine, N-acetyl-serine, and quinolinic acid had a negative association with age, whereas creatinine, homoarginine, lysoPC a C16:1, guanidoacetic acid and 5-Hydroxyindoleacetic acid had a positive association with age. Comparisons between the pre-teen and infant age groups yielded the greatest number of differences followed by the post-pubertal versus infant and post-pubertal versus pre-teen groups. These findings demonstrate age-associated heterogeneity in the pediatric plasma metabolome. Establishing normative reference ranges for metabolite concentrations will be essential to improve the accuracy of metabolomic analyses that include pediatric participants.

developmental biology↗

bioRxiv2026

Structure-based recasting of a mammalian DNA transpososomeas an obligate heterodimer

Eukaryotic DNA transpososomes assemble as nucleoprotein complexes containing multiple identical transposase protomers. We determined the structure of the hyperactive Myotis lucifugus piggyBat transpososome and discovered that it uses an unusual crescent-shaped, asymmetric tetramer to synapse divergent inverted terminal repeats. We found that identical amino-acid sequence motifs adopt distinct roles to mediate two modes of DNA binding: one to perform strand transfer and one, devoid of catalytic activity, that promotes synapsis while simultaneously protecting the transposon from auto-destructive internal cleavage by its active sites. Guided by the observed modularity of the assembly, we engineered an obligate heterodimeric system by identifying mutations that suppress homodimer formation and paired this with specific point mutations that prevent non-targeted integration. By adding to the heterodimer two different TALE domains designed to bind a human genomic safe harbor sequence, we achieved >98% targeted integration at the intended sequence in a plasmid-based assay, validating the viability of heterodimeric transposases for genomic applications.

molecular biology↗

bioRxiv2026

Frugivore species richness influences dietary specialisation and network properties in Asian wet tropical forests

AimTo examine how variation in frugivore species richness influences dietary specialisation and the organisation of plant-frugivore interaction networks in tropical forests. LocationSix undisturbed lowland wet tropical forest sites across four biodiversity hotspots in south and south-east Asia. Time period2016-2024. Major taxa studiedAvian frugivores and fleshy-fruited woody plants. MethodsWe recorded plant-avian frugivore interactions across six undisturbed evergreen forest sites spanning a seven-fold gradient in frugivore species richness, while holding forest type and phylogenetic composition broadly comparable. Using over 4,200 hours of focal observations on 551 fruiting plants, we recorded more than 34,000 feeding visits by 138 frugivore species on 133 plant species. We used a) Joint species distribution models to determine the relative influence of fruit and seed traits, and b) network analyses to evaluate how dietary breadth and network properties varied with frugivore species richness. ResultsAcross sites, frugivore visitation was primarily explained by fruit and seed morphology, with seed size accounting for an average of 39.7% of explained variation, followed by fruit width (24.4%), fruit crop size (21.9%), and pulp lipid content (14.1%). Frugivores in species-rich communities exhibited narrower dietary breadth (Pearsons r = -0.87 between normalised degree and species richness). Correspondingly, plant-frugivore networks became less connected and nested, and more modular, with increasing frugivore richness (Pearsons r = -0.9, -0.98, and 0.84, respectively). Main conclusionsIncreasing frugivore species richness intensifies dietary specialisation, which in turn drives changes in plant-frugivore network structure. These findings highlight how local species richness shapes interaction networks through changes in consumer niche breadth, with implications for the organisation of tropical forest mutualistic communities.

ecology↗

bioRxiv2025

Tracking instances of task evoked oxygen influxes using a novel sensitive BLE enabled wearable fNIRS device identifies mPFC role in spatial memory.

Real-world neuroimaging requires true portability and sensitivity to detect signals from neuronal activity. Conventional methods such as MRI, EEG, or PET are constrained by their size and instrumentation complexity. Near Infra-Red (NIR) based optical methods have the potential for sensitive detection with a smaller footprint. Despite rapid advances in NIR detection there is no known device that is implementable using off-the-shelf integrated microprocessors and possesses the above desired characteristics along with proven sensitivity to detect task evoked responses. Here, we present a Bluetooth Low Energy (BLE)-enabled, high-sensitivity wearable functional near-infrared spectroscopy (fNIRS) device designed for untethered cortical hemodynamic monitoring during naturalistic cognitive tasks. Our fully integrated optical sensing device merges optical data acquisition and wireless transmission into a compact, cable-free platform with a very small footprint. This enables continuous multi-channel recording without placing any constraint on the subjects movement. We validate our device for reliable detection of task-evoked oxy- and deoxy-hemoglobin dynamics in the forearm, primary motor cortex, primary visual cortex, and prefrontal cortex. Subsequently, we capture real-time forebrain activity during a screen-based learning and memory task, revealing robust goal-specific hemodynamic responses. We formulate a method to identify the instances of peak neuronal activity and follow the "task Evoked Instances of Differential Oxygen influx(tEIDO)" as the subject is engaged in a task. These results highlight the potential of our proposed fNIRS device as a mobile neuroimaging solution for next-generation brain-computer interfaces and real-world cognitive monitoring. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=79 SRC="FIGDIR/small/690628v1_ufig1.gif" ALT="Figure 1"> View larger version (22K): org.highwire.dtl.DTLVardef@1f55855org.highwire.dtl.DTLVardef@7a67b8org.highwire.dtl.DTLVardef@2f6146org.highwire.dtl.DTLVardef@9b6e0c_HPS_FORMAT_FIGEXP M_FIG C_FIG

neuroscience↗

bioRxiv2025

Unveiling the Biochemical Mechanisms of Aging and the Implications of Oxidative Stress on Cellular Senescence through Multi-Omics Analysis of Fibroblasts

This research investigates the complex biochemical mechanisms underlying aging by analyzing primary human fibroblasts using a longitudinal multi-omics dataset. This dataset includes cytology, DNA methylation and epigenetic clocks, bioenergetics, mitochondrial DNA sequencing, RNA sequencing, and cytokine profiling. Key findings indicate that mitochondrial efficiency declines with age, while glycolysis becomes more prevalent to compensate for energy demands. Epigenetic clocks, such as Hannum and PhenoAge, showed strong correlations with biological age ({rho} > 0.650, p < 1e-6), validating the experimental setup and confirming that the cultured fibroblasts were aging appropriately. Fibroblasts with SURF1 mutations exhibited accelerated aging, marked by bioenergetic deficits, increased cell volume, and reduced proliferative capacity, underscoring the pivotal role of mitochondrial dysfunction in cellular senescence. Novel insights were gained from analyzing cytokines like IL18 and PCSK9, some of which were linked to age-related diseases such as Alzheimers and cardiovascular disorders. Experimental treatments revealed distinct effects on cellular aging. Dexamethasone reduced inflammation but also increased DNA methylation, induced metabolic inefficiencies, and shortened cellular lifespan. Oligomycin heightened oxidative stress and RNA degradation, emphasizing how such treatments contribute to cellular stress and metabolic imbalance while shedding light on aging mechanisms. By uncovering connections between mitochondrial dysfunction, epigenetic biomarkers, and immune dysregulation, this study identifies potential therapeutic targets for age-related diseases. Future research could validate the most promising biomarkers across diverse cell types and experimental treatments to build a more comprehensive understanding of aging.

genomics↗

bioRxiv2025

Effects of frugivore species pool and seed size on the diversity and functional composition of frugivores visiting fruiting trees

The relationship between biodiversity and ecosystem functioning in seed dispersal remains understudied despite its critical role in maintaining plant diversity in the tropics. Field studies on this relationship are often confounded by environmental and phylogenetic variations across species richness gradients. We examined how overall avian frugivore species richness at a site influenced the frugivore richness, visitation rates and functional composition of two key effect traitsbeak width and hand-wing indexon fruiting trees. Across six sites in tropical Asia, spanning a sevenfold gradient in frugivore species richness but with similar forest types and phylogenetically nested frugivore communities, we recorded 34,014 interactions between 134 avian frugivores and 131 plant species. Our results provide some support for the biodiversity-ecosystem functioning relationship, as higher overall frugivore species richness increased the number of frugivore species visiting individual fruiting trees but not the functional composition of frugivores. Seed size had a stronger influence on the frugivore species richness, visitation rates, and the beak size of visiting frugivores, highlighting the dominant role of morphological trait matching in influencing plant-frugivore interactions. Our findings suggest functional redundancy in certain aspects of seed dispersal effectiveness due to density compensation and the presence of key seed disperser lineages in species-poor sites.

ecology↗

bioRxiv2024

Interlaboratory comparison of standardised metabolomics and lipidomics analyses in human and rodent blood using the MxP(R) Quant 500 kit

Metabolomics and lipidomics are pivotal in understanding phenotypic variations beyond genomics. However, quantification and comparability of mass spectrometry (MS)-derived data are challenging. Standardised assays can enhance data comparability, enabling applications in multi-center epidemiological and clinical studies. Here we evaluated the performance and reproducibility of the MxP(R) Quant 500 kit across 14 laboratories. The kit allows quantification of 634 different metabolites from 26 compound classes using triple quadrupole MS. Each laboratory analysed twelve samples, including human plasma and serum, lipaemic plasma, NIST SRM 1950, and mouse and rat plasma, in triplicates. 505 out of the 634 metabolites were measurable above the limit of detection in all laboratories, while eight metabolites were undetectable in our study. Out of the 505 metabolites, 412 were observed in both human and rodent samples. Overall, the kit exhibited high reproducibility with a median coefficient of variation (CV) of 14.3 %. CVs in NIST SRM 1950 reference plasma were below 25 % and 10 % for 494 and 138 metabolites, respectively. To facilitate further inspection of reproducibility for any compound, we provide detailed results from the in-depth evaluation of reproducibility across concentration ranges using Deming regression. Interlaboratory reproducibility was similar across sample types, with some species-, matrix-, and phenotype-specific differences due to variations in concentration ranges. Comparisons with previous studies on the performance of MS-based kits (including the AbsoluteIDQ p180 and the Lipidyzer) revealed good concordance of reproducibility results and measured absolute concentrations in NIST SRM 1950 for most metabolites, making the MxP(R) Quant 500 kit a relevant tool to apply metabolomics and lipidomics in multi-center studies.

biochemistry↗

bioRxiv2022

Assessment of local potato cultivars found in Cis-Himalayan region of West Bengal through morphology and biochemical profiling

Potato is a major global food crop grown for tubers (underground storage stems) that are high in carbohydrates, minerals, and vitamins. The presence of anthocyanins in tuber skin and flesh can have a significant impact on customer preferences. Potatoes are also high in resistant starches, which have a variety of health benefits, including enhanced fullness, cholesterol reduction, and a reduced risk of colon cancer etc. In West Bengal, diabetes is prevalent. Similarly, according to ICMR studies, colon cancer affects 8.9% of all cancer patients in West Bengal cancer which is caused by ill eating habits or the consumption of foods that are low in antioxidants. 5-10% of colon cancers are genetically caused, while the remainder are caused by poor eating habits or the consumption of foods that are low in antioxidants. To address these issues, one strategy is to eat foods with a low glycemic index and high antioxidant content as a staple food. The tuber tissues of the potato (S. tuberosum L.) accumulate various quantities of anthocyanins, which are commonly consumed around the world. Anthocyanins are pigments that range in colour from red to purple and are found throughout the plant kingdom. Anthocyanins are powerful antioxidants that are water soluble. The red skin potato is well-known among the general public. The epidermal layer contains a high quantity of red anthocyanins, which causes the skin to be red. With this background the present study has been undertaken to address the following objectives morphological (quantitative and qualitative traits) and biochemical characterization of local potato cultivars and identification of most stable genotypes based on the anthocyanin content and tuber yield of local potato cultivars. For our recent research 14 local potato cultivar from North Bengal were collected and evaluated for DUS characterization showed wide range of variability with respect to different phenotypic variants of ten characters. Overall predominant DUS characters of local potato cultivars found in North Bengal are medium sized apical length of sprout, short stem height, compact foliage structure, open leaf structure, ovate lanceolate type leaflet shape, purple leaf sprout predominant colour, spherical leaf sprout shape, medium intensity of anthicyanin coloraton at the base, light intensity of anthicyanin coloraton at the tip and weak nature of light sprout pubescence base. The results of the present investigation suggest that local potato cultivars collected from the northern part of West Bengal showed a high level of genetic variation. The differences between genotypes were highly significant at the 1% and 5% alpha level for all characters like tuber yield, length and weight of tuber, length of sprout, chlorophyll content, canopy temperature, and number of tuber per plant, according to the analysis of variance. Three quantitative traits namely tuber yield, tuber breadth, tuber length played major role in the genetic variance. Anthocyanin content had more contribution to diversify the local potato cultures according to biochemical characterization AMMI analysis suggested that Jalpai from CoochBehar is the most stable potato cultivars in respect to anthocyanin content and tuber yield per plant.

plant biology↗

bioRxiv2021

Utilizing Multimodal Imaging to Visualize Potential Mechanism for Sudden Death in Epilepsy

Sudden death in epilepsy, or SUDEP, is a fatal condition that accounts for more than 4000 deaths each year. Limited clinical and preclinical data on sudden death suggests critical contributions from autonomic, cardiac, and respiratory pathways. Recent animal (rat) studies on kainic acid induced seizure models explored a potential mechanism for such sudden and severe cardiorespiratory dysregulation being linked to acid reflux induced laryngospasm. Here, we expand on those previous investigations and utilize a multimodal approach to provide visual evidence of acid reflux-initiated laryngospasm and subsequent fatal cardiorespiratory distress in seizing rats. We used systemic kainic acid to acutely induce seizure activity in Long Evans rats, under urethane anesthesia. We recorded electroencephalography (EEG), electrocardiography (ECG), chest plethysmography and esophageal pH signals during simultaneous fast MRI scans of the rat stomach and esophagus. MRI images, in conjunction with electrophysiology data were used to identify seizure progression, stomach acid movement up the esophagus, cardiorespiratory changes, and sudden death. In all cases of sudden death, esophageal pH recordings alongside MRI images visualized stomach acid movement up the esophagus. Severe cardiac (ST segment elevation), respiratory (intermittent apnea) and brain activity (EEG narrowing due to hypoxia) changes were observed only after acid reached the larynx, which strongly suggests onset of laryngospasm following acid reflux. Additionally, absence of stomach acid in the esophagus of animals that survived acute seizure, provided evidence of a causal relationship between acid reflux and sudden death. The complimentary information coming from electrophysiology and fast MRI scans provided insight into the mechanism of esophageal reflux, laryngospasm, obstructive apnea, and subsequent sudden death in seizing animals. The results carry clinical significance as they outline a potential mechanism that may be relevant to SUDEP in humans.

neuroscience↗

bioRxiv2019

MRI Powered and Triggered Current Stimulator for Concurrent Stimulation and MRI

Bioelectric stimulation during concurrent magnetic resonance imaging (MRI) is of interest to basic and translational studies. However, existing stimulation systems often interfere with MRI, are difficult to use or scale up, have limited efficacy, or cause safety concerns. To address these issues, we present a novel device capable of supplying current stimulation synchronized with MRI while being wirelessly powered by the MRI gradient fields. Results from testing it with phantoms and live animals in a 7 Tesla small-animal MRI system suggest that the device is able to harvest up to 72 (or 18) mW power during typical echo-planar imaging (or fast low angle shot imaging) and usable for stimulating peripheral muscle or nerve to modulate the brain or the gut, with minimal effects on MRI image quality. As a compact and standalone system, the plug-and-play device is suitable for animal research and merits further development for human applications.

bioengineering↗

bioRxiv2018

Adaptive and Wireless Recordings of Electrophysiological Signals during Concurrent Magnetic Resonance Imaging

Strong electromagnetic fields that occur during functional magnetic resonance imaging (fMRI) presents a challenging environment for concurrent electrophysiological recordings. Here, we present a miniaturized, wireless platform - \"MR-Link\" (Multimodal Recording Link) that provides a hardware solution for simultaneous electrophysiological and fMRI signal acquisition. The device detects the changes in the electromagnetic field during fMRI to synchronize amplification and sampling of electrophysiological signals with minimal artifacts. It wirelessly transmits the recorded data at a frequency detectable by the MR-receiver coil. The transmitted data is readily separable from MRI in the frequency domain. To demonstrate its efficacy, we used this device to record electrocardiograms and somatosensory evoked potential during concurrent fMRI scans. The device minimized the fMRI-induced artifacts in electrophysiological data and wirelessly transmitted the data back to the receiver coil without compromising fMRI signal quality. The device is compact (22 mm dia., 2gms) and can be placed within the MR-bore to precisely synchronize with fMRI. Therefore, MR-Link offers an inexpensive system by eliminating the need for amplifiers with a high dynamic range, high-speed sampling, additional storage or synchronization hardware for electrophysiological signal acquisition. It is expected to enable a broader range of applications of simultaneous fMRI and electrophysiology in animals and humans.

bioengineering↗