Biology subjects

Makris, A.

Publications and source records attributed to Makris, A..

3 recordsLinked to original sources

bioRxiv2026

Evolutionary diversification of the SymRK receptor family in land plants

Plant receptor-like kinases (RLKs) are involved in diverse processes, ranging from growth and reproduction to interactions with microbes. Variation in the extracellular domains delineates several RLKs subfamilies, including the malectin-like domain leucine-rich repeat receptor-like kinases (MLD-LRR-RLKs). Symbiosis Receptor-like Kinase (SymRK) is the prototypical member of MLD-LRR-RLKs and is required for microbial accommodation in host roots during root endosymbiosis. Yet, comparative phylogenetic analysis of SymRK orthologs in the broader context of MLD-LRR-RLK subfamily evolution remains limited. In this study, we examined the inventory, phylogeny and clade-specific evolutionary and transcriptional characteristics of this receptor group. SymRK and its closest homologs are present in most land plant lineages and group into four major clades and six additional species-specific clades. These clades can be distinguished by their evolutionary characteristics as either conserved with reduced gene copy number changes (including SymRK) or expanded and diversified, as observed in clade IV. Clade IV dynamics are largely driven by tandem gene duplications, which often arise within gene clusters. We further analysed the evolutionary characteristics of MLD-LRR-RLKs at the population level in Arabidopsis thaliana accessions. We found that some genes are conserved across accessions and are therefore likely to be functionally important, whereas a subset of genes, often located within tandem clusters, are highly diverse and likely contribute to accession-specific adaptations. Finally, most MLD-LRR-RLKs in the A. thaliana Col-0 accession are expressed in roots and respond broadly to biotic stimuli at the transcriptional level. Notably, clustered genes frequently exhibited divergent expression profiles, suggesting transcriptional diversification. Together, we revealed two contrasting evolutionary characteristics among members of the MLD-LRR-RLK subfamily, potentially associated with their functions in plants.

plant biology↗

bioRxiv2026

Karrikin and strigolactone signalling affect pattern-triggered immunity and resistance to specific pathogens

Hormone signalling is important for plant adaptation to biotic stress. Karrikins (KARs), smoke-derived compounds, and strigolactones (SLs), endogenous plant hormones, are families of butenolide mole-cules, sharing a convergent perception and signalling pathway to regulate a plethora of developmental processes and plant-symbiont relationships. Perception of KARs and SLs is mediated by the /{beta}-hydro-lase KARRIKIN INSENSITIVE 2 (KAI2) and DWARF14 (D14), respectively, each resulting in the for-mation of an E3 ubiquitin ligase complex with the F-Box protein MORE AXILLIARY GROWTH 2 (MAX2) to target transcriptional repressors of the SUPPRESSOR OF MAX2 (SMAX)/SMAX-LIKE (SMXL) family for degradation. Most likely, KAI2 additionally perceives a still elusive endogenous ligand (KAI2-ligand, KL). Recent reports suggest a role of KL/SL signalling in plant immunity, but how these pathways are involved in defence, while balancing appropriate symbiont interactions remains largely unknown. Here, we report that KL and SL signalling quantitatively modulate plant immune responses and pathogen re-sistance. In Arabidopsis thaliana (hereafter Arabidopsis), disrupting or de-repressing KL or SL signalling affects plant susceptibility to a variety of plant pathogens. Furthermore, we describe a previously un-known role for KL and SL signalling in modulating pattern-triggered immunity (PTI). Interfering with KL and SL perception in Arabidopsis had similar effects on microbe-associated molecular pattern (MAMP)-triggered reactive oxygen species production, but transcriptomic profiling suggests a predominant role for KL signalling in regulating the extent of PTI. Importantly, KAI2- and D14-mediated regulation of MAMP-triggered ROS production extends to Lotus japonicus and, in the case of KAI2, to Nicotiana benthamiana, indicating conserved immuno-modulatory roles across dicotyledonous lineages. Together our data identify KL and SL signalling, with a predominant role for the KL pathway, as a conserved modulatory layer of plant immunity and provides a framework for understanding how developmental pathways intersect with immune regulation.

plant biology↗

bioRxiv2022

Systemic silencing and DNA methylation of a host reporter gene induced by a beneficial fungal root endophyte

A growing body of evidence suggests that RNA interference (RNAi) plays a pivotal role in the communication between plants and pathogenic fungi, where a bi-directional cross-kingdom RNAi is established to the advantage of either the host or the pathogen. Similar mechanisms acting during plant association with non-pathogenic symbiotic microorganisms have been elusive to this date. Here, we report on an RNAi-based mechanism of communication between a beneficial fungal endophyte, Fusarium solani strain K (FsK) and its host plants. This soil-borne endophyte that confers resistance and/or tolerance to biotic and abiotic stress in tomato and, as shown in this study, promotes plant growth in Nicotiana benthamiana, is restricted to the root system in both host plants. We first showed that the fungus has a functional core RNAi machinery; double stranded RNAs (dsRNAs) are processed into short interfering RNAs (siRNAs) of predominantly 21-nt in size, which lead to the degradation of homologous mRNAs. Importantly, by using an RNAi sensor system, we demonstrated that root colonization of N. benthamiana by FsK led to the induction of systemic silencing and DNA methylation of a host reporter gene.. These data reflect a more general but so far unrecognized mechanism wherein root endophytes systemically translocate RNAi signals to the aboveground tissues of their hosts to modulate gene expression during symbiosis, which may be translated to the beneficial phenotypes. HighlightA root-restricted, beneficial fungal endophyte can induce systemic silencing and epigenetic modifications to its host plant.

plant biology↗