Biology subjects

Maganga, G. D.

Publications and source records attributed to Maganga, G. D..

6 recordsLinked to original sources

bioRxiv2025

Patterns of Aedes aegypti immature ecology and arboviral epidemic risks in peri-urban and intra-urban villages of Cocody-Bingerville, Cote d'Ivoire: insights from a dengue outbreak

BackgroundIn Cote dIvoire, Aedes vector studies and arboviral outbreak responses have mostly focused on urbanized neighborhoods including intra-urban villages, but have often neglected peripheral villages. We assessed and compared Aedes aegypti population dynamics and dengue (DEN) and yellow fever (YF) epidemic risks among peri-urban and intra-urban villages during the 2023-2024 DEN outbreaks in Cocody-Bingerville, southern Cote dIvoire. MethodsFrom August 2023 to July 2024, we sampled Aedes eggs, larvae and pupae in the domestic and peridomestic ecozones of three peri-urban and three intra-urban villages. We compared Ae. aegypti larval infestation, container productivity, Stegomyia indices (house index: HI, container index: CI, and Breteau index: BI) and pupal indices (pupae per house index: PHI, pupae per container index: PCI, and pupae per person index: PPI) between the study villages. ResultsAedes aegypti widely dominated Aedes fauna in both peri-urban (98.1%) and intra-urban (99.8%) villages. Immatures were sampled from seven container types. However, the most productive containers were small containers, tires and medium containers which produced 81.8% of all the pupae in the peri-urban villages, and tires and small containers yielding 83.2% in the intra-urban villages. These key containers produced substantially more pupae in the domestic ecozones (70.9%) in the peri-urban villages, but equitably between the domestic (48.8%) and peridomestic (51.2%) ecozones in the intra-urban villages. In each study village, they yielded around 90% and 80% of pupae during the short dry and long rainy seasons, respectively. CI, HI and BI were comparable between the peri-urban (29.9%, 35.9% and 41.4) and intra-urban (36.7%, 48.0% and 56.2) villages, and surpassed the World Health Organization (WHO) DEN and YF epidemic thresholds. PCI (1.26 vs. 3.38 pupae/container) and PHI (1.75 vs. 5.18 pupae/house) were lower in the peri-urban than in the intra-urban villages, while PPI (0.54 vs. 1.25 pupae/person) was similar between the villages. Unlike temperature and relative humidity, all indices were strongly associated with rainfall in all the study villages. ConclusionIn Cocody-Bingerville, all sampled peri-urban and intra-urban villages exhibited high densities of Ae. aegypti immatures and habitats. Although larval habitats were diverse, a limited number of container types accounted for over 80% of pupal production. Stegomyia indices remained consistently elevated, exceeding WHO epidemic thresholds for DEN and YF across all study villages, potentially contributing to ongoing DEN outbreaks. Therefore, vector surveillance and outbreak responses should be extended to peri-urban villages, as they could act as arbovirus re-introduction sources. Community-based interventions targeting the identified key containers could help control the outbreaks. This study provides a baseline for strategically reducing human exposure to arboviruses in the study villages.

ecology↗

bioRxiv2025

Assessing the oviposition and larval ecologies of mosquitoes and Stegomyia indices along an urban-rural gradient during ongoing dengue outbreaks in the arboviral hotspots of Cocody-Bingerville, southeastern Cote d'Ivoire

BackgroundCote dIvoire (West Africa) has recurrently faced multiple outbreaks of Aedes mosquito-transmitted arboviral diseases (e.g., dengue (DEN) and yellow fever (YF)), mainly in the health district of Cocody-Bingerville subjected to rapid urbanization. Thus, this study assessed the ecology of mosquito immatures and Stegomyia indices along an urban-rural gradient during ongoing dengue outbreaks within arboviral hotspots in Cocody-Bingerville. MethodsBetween August 2023 and July 2024, we collected mosquito eggs and larvae in urban, suburban and rural areas of Cocody-Bingerville using standard ovitraps and larval surveys. Collections were done in the domestic and peridomestic ecozones, and during rainy and dry seasons. Species composition, oviposition indices (ovitrap positive index (OPI), mean egg counts per ovitrap (MEO) and egg density index (EDI)) and Stegomyia indices (house index (HI), container index (CI) and Breteau index (BI)) were compared across the study areas, ecozones and seasons, and with the World Health Organization (WHO) DEN and YF epidemic thresholds. ResultsOverall, all the study areas were highly infested with diversified mosquito species, with the highest Stegomyia risk indices recorded in the urban areas. We identified (individuals: species) in the all study (70,550: 15), urban (32,331: 10), suburban (19,768: 14) and rural (18,451: 15) areas. Mosquitoes were mostly abundant in the domestic ecozones and rainy seasons. Larvae bred mainly in tires in the urban and suburban, and small containers in the rural areas. Wild Aedes species (Aedes dendrophilus, Aedes lilii, Aedes fraseri, Aedes luteocephalus, Aedes metallicus and Aedes vittatus) were mostly restricted in the suburban and rural areas, as well as mosquito predatory larvae (Lutzia tigripes, Toxorhynchites and Eretmapodites). However, Aedes aegypti spread and dominated throughout, showing highest proportions in the urban (90.2%), followed by the suburban (68.6%) and rural (68.5%) areas. OPI, MEO (egg/ovitrap/week) and EDI (egg/ovitrap/week) values were higher in the urban areas (53.0%, 8.7 and 16.4) than in the suburban (43.1%, 5.56 and 12.9) and rural (33.7%, 4.4 and 13.0) areas, respectively, and correlated with Stegomyia indices. HI, CI and BI were higher in the urban (48.0%, 40.4% and 61.8) compared with the suburban (37.8%, 32.0% and 43.3) and rural (34.5%, 28.87% and 39.8) areas. Stegomyia indices corresponded to the WHO-density scales of 6-8 in the urban and 5-7 in the suburban and rural areas. Stegomyia indices were all above the WHO epidemic thresholds: YF risk was high the urban and moderate in the suburban and rural areas, while people were permanently exposed to high risk of DEN outbreaks in all the areas. Conclusions/significanceIn Cocody-Bingerville, urbanization shifts mosquito biodiversity, with restriction of wild Aedes and predatory species in the rural and suburban areas and dominance of Ae. aegypti in the urban areas. Stegomyia indices exceeded the WHO DEN and YF epidemic thresholds in all the areas, with highest risks in the urban areas. This could explain the current DEN outbreaks in urban Cocody-Bingerville. Our study provides a baseline for raising local community awareness and guiding appropriate preventive actions, including managing identified larval habitats to contain ongoing dengue outbreaks in Cote dIvoire. Author summaryCote dIvoire has experienced several epidemics of dengue and yellow fever transmitted by Aedes mosquitoes. Over 80-90% of dengue and yellow fever cases were reported in the urban areas of the health district of Cocody-Bingerville, southeastern Cote dIvoire. The increase in the frequency, magnitude and burden of these outbreaks has paralleled to the fast and uncontrolled urbanization. However, data are still lacking on how urbanization influences the ecology of the local mosquito vectors and the risks of transmission of dengue and yellow fever, thus compromising adequate planning of preventive actions. Therefore, we assessed the mosquito species composition and larval breeding sites, and Stegomyia indices in urban, suburban and rural areas within the disease hotspots during ongoing dengue outbreaks in the Cocody-Bingerville. Our results showed that mosquito species diversity altered considerably from urban to rural areas, leading to a dominance of the main vector Aedes aegypti in all the study areas. Moreover, Aedes aegypti showed the highest proportions in the urban areas that contained more larval breeding sites (e.g., tires and small containers). Stegomyia indices were very high and above the World Health Organization (WHO) epidemic thresholds, suggesting that people were exposed to high dengue risks and moderate yellow fever risks in all the study areas, but were more exposed to both diseases in the urban areas. This could explain the recurrent and present dengue outbreaks in urban Cocody-Bingerville. A community-based management of identified larval habitats might help to control the ongoing dengue outbreaks in Cocody-Bingerville, and more widely in similar settings.

ecology↗

bioRxiv2024

Toxoplasma gondii from Gabonese forest, Central Africa: first report of an African wild population

The protozoan Toxoplasma gondii is a ubiquitous and highly prevalent parasite that can theoretically infect all warm-blooded vertebrates. In humans, toxoplasmosis causes infections in both immunodeficient and immunocompetent patients, congenital toxoplasmosis, and ocular lesions. These manifestations have different degrees of severity. Clinical severity is determined by multiple factors, including the genotype of the T. gondii strain involved in the infection. T. gondii exhibits remarkable genetic diversity, which varies according to geography and ecotype (domestic or wild). Previous studies have demonstrated that wild strains of T. gondii are of particular epidemiological interest, as they have been associated with more severe forms of toxoplasmosis in different regions of the world. However, no data on wild strains of T. gondii are available from Africa. In this study, we describe for the first time a wild T. gondii population from Africa. Wild animals from the forest environment of Gabon, Central Africa, were screened for chronic infection with T. gondii using quantitative PCR. The infecting T. gondii strains were genotyped whenever possible by the analysis of 15 microsatellite markers and by whole-genome sequencing. A new genotype was identified and was found to be highly divergent from previously described T. gondii populations worldwide, including those from the domestic environment in Gabon. Whole genome-based analyses indicated that this strain was genetically closer to a wild Pan-American population than to domestic African populations. This discovery marks the first description of a wild T. gondii population in Africa. The role of wild T. gondii strains in the incidence of severe toxoplasmosis in Africa remains unclear and requires further investigation. Author SummaryThe emergence of new pathogens from wildlife is today a well-recognized health threat. Studying these infectious agents has proven to be challenging due to the difficulty in accessing to samples from wild animals. In the present study, we took advantage of a recent survey on the viral carriage of wild animals from Gabon, Central Africa, to screen animal samples for the presence of the zoonotic protozoan Toxoplasma gondii, a ubiquitous and highly prevalent parasite that can theoretically infect all warm-blooded vertebrates, including humans. This parasite is the etiological agent of toxoplasmosis, a disease causing a substantial public health burden worldwide through different clinical manifestations and varying degrees of severity. A novel genotype was identified and found to be highly divergent from previously described T. gondii populations worldwide, including those from the domestic environment in Gabon. This discovery marks the first description of a wild T. gondii population in Africa. It has been shown that wild strains of T. gondii are of significant epidemiological relevance, as they have been associated with more severe forms of toxoplasmosis in different regions of the world. The implications of wild T. gondii strains in the incidence of severe toxoplasmosis in Africa remain unclear and merit further investigation.

microbiology↗

bioRxiv2023

Evidence for circulation of Rift Valley fever virus in wildlife and domestic animals in a forest environment in Gabon, Central Africa

Rift Valley fever (RVF) is a mosquito-borne viral zoonosis caused by the RVF virus (RVFV) that can infect domestic and wild animals. Although the RVFV transmission cycle has been well documented across Africa in savanna ecosystems, little is known about its transmission in tropical rainforest settings, particularly in Central Africa. We therefore conducted a survey in northeastern Gabon to assess RVFV circulation among wild and domestic animals. Among 163 wildlife samples tested using RVFV-specific RT-qPCR, four ruminants belonging to subfamily Cephalophinae were detected positive. The phylogenetic analysis revealed that the four RVFV sequences clustered together with a virus isolated in Namibia within the well-structured Egyptian clade. A cross-sectional survey conducted on sheep, goats and dogs living in villages within the same area determined the IgG RVFV-specific antibody prevalence using cELISA. Out of the 306 small ruminants tested (214 goats, 92 sheep), an overall antibody prevalence of 15.4% (95% CI [11.5-19.9]) was observed with a higher rate in goats than in sheep (20.1% versus 3.3%). RVFV-specific antibodies were detected in a single dog out 26 tested. Neither age, sex of domestic animals nor season was found to be significant risk factors of RVFV occurrence. Our findings highlight sylvatic circulation of RVFV for the first time in Gabon. These results stress the need to develop adequate surveillance plan measures to better control the public health threat of RVFV. Author summaryRift Valley fever (RVF) is a mosquito-borne viral zoonosis caused by the RVF virus (RVFV) that can affect wild and domestic animals. Although the RVFV transmission cycle has been well documented across Africa in savanna ecosystems, little is known about its transmission in tropical rainforests, especially in Central Africa. We thus conducted a survey in northeastern Gabon to assess RVFV circulation among wild and domestic animals. In this study, we demonstrated for the first time in Gabon the presence of the RVFV in two wildlife species (Peters duiker Cephalophus callipygus and the blue duiker Philantomba monticola). In addition, we detected RVFV-specific antibodies in small domestic ruminants (sheep and goats) with an overall antibody prevalence of 15.4%, with a much higher seroprevalence rate in goats than sheep (20.1% versus 3.3%). Furthermore, RVFV-specific antibodies were also observed in a single (hunting) dog out of the 26 tested. These results stress the need to develop adequate surveillance plan measures to better control the public health threat of RVFV.

microbiology↗

bioRxiv2022

African army ants at the forefront of virome surveillance in a remote tropical forest

In this study, we used a predator-enabled metagenomics strategy to sample the virome of a remote and difficult-to-access densely forested African tropical region. Specifically, we focused our study on the use of army ants of the genus Dorylus that are obligate collective foragers and group predators that attack and overwhelm a broad array of animal prey. Using 209 army ant samples collected from 29 colonies and the virion-associated nucleic acid-based metagenomics approach, we showed that a broad diversity of bacterial, plant, invertebrate and vertebrate viral sequences were accumulated by army ants: including sequences from 157 different viral genera in 56 viral families. This suggests that using predators and scavengers such as army ants to sample broad swathes of tropical forest viromes can shed light on the composition and the structure of viral populations of these complex and inaccessible ecosystems.

microbiology↗

bioRxiv2020

At least seven distinct rotavirus genotype constellations in bats with evidence of reassortment and zoonotic transmissions

Bats host many viruses pathogenic to humans, and increasing evidence suggests that Rotavirus A (RVA) also belongs to this list. Rotaviruses cause diarrheal disease in many mammals and birds, and their segmented genomes allow them to reassort and increase their genetic diversity. Eighteen out of 2,142 bat fecal samples (0.8%) collected from Europe, Central America and Africa were PCR-positive for RVA and 11 of those were fully characterized using viral metagenomics. Upon contrasting their genomes with publicly available data, at least 7 distinct bat RVA genotype constellations (GCs) were identified, including evidence of reassortments and 6 novel genotypes. Some of these constellations are spread across the world, whereas others appear to be geographically restricted. Our analyses also suggest that several unusual human and equine RVA strains might be of bat RVA origin, based on their phylogenetic clustering, despite varying levels of nucleotide sequence identities between them. Although SA11 is one of the most widely used reference strains for RVA research and forms the backbone of a reverse genetics system, its origin remained enigmatic. Remarkably, the majority of the genotypes of SA11-like strains were shared with Gabonese bat RVAs, suggesting a potential common origin. Overall, our findings suggest an underexplored genetic diversity of RVAs in bats, which is likely only the tip of the iceberg. Increasing contact between humans and bat wildlife will further increase the zoonosis risk, which warrants closer attention to these viruses. ImportanceThe increased research on bat coronaviruses after SARS-CoV and MERS-CoVallowed the very rapid identification of SARS-CoV-2. This is an excellent example of the importance of knowing viruses harbored by wildlife in general and bats in particular, for global preparedness against emerging viral pathogens. The current effort to characterize bat rotavirus strains from 3 continents shed light on the vast genetic diversity of rotaviruses and also hinted at a bat origin for several atypical rotaviruses in humans and animals, implying that zoonoses of bat rotaviruses might occur more frequently than currently realized.

microbiology↗