Biology subjects

Mackem, S.

Publications and source records attributed to Mackem, S..

6 recordsLinked to original sources

bioRxiv2025

A tumorigenesis threshold for endogenous Myc revealed by dosage-compensation for Myc haploinsufficiency in the absence of p53.

The MYC proto-oncogene is crucial for neoplasia in most tumors. Overexpressed, oncogenic MYC amplifies the flux through most major processes but does not specify a unique carcinogenic pathway. This "amplifier" model suggests that MYC must exceed an expression threshold to become oncogenic. We designed a genetic test of this model, using the mouse Trp53 null mutant (p53KO) as a highly robust tumor generator to examine the effect of a modest change in the endogenous Myc level (Myc+/-). Strikingly, tumor-free survival is greatly extended in p53KO mice with haploid Myc gene-dosage, yet in the tumors that do develop (mainly hemangiosarcomas and thymic lymphomas), their Myc deficit has been invariably compensated either by increasing Myc genomic dosage (hemangiosarcomas) or expression (lymphomas). Furthermore, acutely halving the endogenous Myc gene-dosage in established tumor allografts curtails growth rates. These results indicate that even an incremental reduction of MYC activity can be salutary in cancer and that one of the major tumor suppressor functions of p53 derives from its ability to prevent MYC overexpression. Myc generates acute DNA damage by several mechanisms and accordingly, p53s anti-Myc function may be inextricably linked to its role in genome integrity surveillance.

cancer biology↗

bioRxiv2025

Dual Bmp-negative feedback loops modulate both AER and ZPA function to buffer and constrain postaxial digit number.

Several lines of evidence indicate that posterior (postaxial) digit number in tetrapod vertebrates is constrained to the pentadactyl state by interactions between the 2 major signaling centers that organize digit pattern and growth, the Shh-expressing ZPA and the Fgf-expressing AER ectoderm. Negative short-range effects of Shh on the immediately overlying AER limit its posterior extent and function, either by direct Shh signaling or with Bmps playing a key role. How this strong inhibitory effect is counter-balanced to maintain pentadactyly in many vertebrate species remains less clear. In this study we used genetic approaches in mouse to re-evaluate the mechanism by which Shh signaling modulates AER function and demonstrate that this occurs via Shh-target Bmps that act as a relay signal, rather than by direct Shh action. Furthermore, we show that Shh-induced Bmps also act directly on the ZPA, in a negative feedback loop, to down-regulate Shh expression and ZPA extent. We provide evidence that these dual Bmp-driven negative feedback loops robustly balance total Bmp levels to constrain postaxial digit number. Significance StatementThis study examines how vertebrates, including humans, are generally constrained to forming five fingers or toes (pentadactyly) during normal development. Two key signaling centers in the limb bud, producing Sonic hedgehog (Shh) in the posterior mesoderm (ZPA) and Fgfs in the marginal ectoderm (AER), interact in a positive feedback loop to direct and coordinate limb outgrowth. However, short-range negative interaction between these two centers limits posterior digit numbers. Using genetic approaches in mouse, we show that Bmps, rather than Shh, signal directly to the AER to act as the primary mediators of this constraint. Shh-induced target Bmps act directly on AER to inhibit its function and prevent posterior digit expansion, and they also act directly on ZPA in a negative feedback loop to inhibit Shh expression. These dual Bmp-driven feedback circuits act together to balance Bmp activity and robustly limit posterior digit number to the pentadactyl state. This finding enhances our understanding of how disrupted developmental regulation may lead to congenital limb malformations and how evolutionary constraints on digit number may be imposed.

developmental biology↗

bioRxiv2025

A pivotal role for Wnt antagonists in constraining Wnt activity to promote digit joint specification.

Bmps and Wnts play opposing roles in several contexts during chondrogenesis and joint formation. Using genetic and genomic approaches, we found instead that canonical Wnts can cooperate with Bmps to enhance pSmad1/5 activity and initiate chondrogenic commitment in digit tip progenitors. 5Hoxd{Delta}/{Delta} mutant digits are characterized by elevated Bmp and pSmad1/5 activity and subsequent joint loss. We show that expressing stabilized {beta}catenin ({beta}catCA) in interdigit mesenchyme rescues 5Hoxd{Delta}/{Delta} digit joint loss non-autonomously, by inducing secreted Wnt antagonists and normalizing digit tip pSmad1/5 levels. Indeed, genetic removal of Dkk2 in 5Hoxd{Delta}/{Delta} prevented joint rescue by {beta}catCA. Furthermore, elevating Wnt activity with Gsk3{beta} antagonists in limb bud culture stabilized pSmad1/5 levels and enhanced Bmp activity. Elevated pSmad1/5, as seen in 5Hoxd{Delta}/{Delta}, accelerates chondrogenic commitment, impeding a switch of phalanx forming region (PFR) cells in the digit tip to interzone (joint progenitor) fate. We propose that, before progenitors transit into PFR, Wnt antagonists cooperate with Fgfs to prevent precocious pSmad1/5 accumulation by stabilizing Gsk3{beta} to promote Smad-linker phosphorylation and Smad1/5 degradation. Consequently, Wnt antagonists play a key role in modulating the pace of initial commitment of digit progenitors to chondrogenesis, together with Fgfs, and maintain mesenchymal plasticity to balance digit phalanx and joint formation.

developmental biology↗

bioRxiv2022

A spatio-temporally constrained gene regulatory network directed by PBX1/2 acquires limb patterning specificity via HAND2

During development cell fates are specified by tightly controlled gene expression programs. PBX TALE transcription factors control gene regulatory networks (GRN) that direct vertebrate tissue patterning and organ morphogenesis. How PBX1/2 proteins acquire context-specific functions, despite widespread embryonic expression of Pbx1/2, remains elusive. In mouse limb buds, mesenchymal-specific loss of PBX1/2 or of the transcriptional regulator HAND2 results in similar phenotypes, suggesting that PBX1/2- and HAND2-dependent programs converge to control limb development. To investigate this scenario, we combined tissue-specific and temporally-controlled mutagenesis with multi-omics approaches using the murine hindlimb bud as a model. We reconstructed a GRN collaboratively directed by PBX1/2 and HAND2, demonstrating that Pbx1-Hand2 genetically interact in vivo during hindlimb patterning, with PBX1 concomitantly acting as an upstream regulator of Hand2. At organismal-level resolution the GRN is active within restricted subsets of posterior-proximal hindlimb mesenchymal cells, wherein Pbx1/2 and Hand2 are co-expressed with their target genes. Genome-wide profiling of PBX1 binding across multiple tissues further revealed that HAND2 selects a subset of PBX-bound regions to impart limb patterning functionality. This research elucidates mechanisms underlying limb bud-specific functions by PBX1/2, while informing general principles by which promiscuous transcription factors cooperate with select cofactors to instruct distinct developmental programs.

developmental biology↗

bioRxiv2020

Sonic Hedgehog is not a limb morphogen but acts as a trigger to specify all digits.

Limb patterning by Sonic hedgehog (Shh) has served as a paradigm of "morphogen" function, acting either by graded spatial or temporal signal integration. Yet how Shh instructs distinct digit identities remains controversial. Here, we bypassed the requirement for Shh in cell survival during limb bud outgrowth and demonstrate that a transient, early Shh pulse is both necessary and sufficient for normal limb development. Our analysis of Shh-responding cells shows signaling acts at only short-range during this time window and that Shh patterns digits indirectly, via a relay mechanism, rather than by direct spatial or temporal signal integration. Using a genetic assay for relay signaling, we unexpectedly discovered Shh also specifies digit 1 (the thumb; previously thought to be exclusively Shh-independent) indirectly, thus implicating Shh in a unique regulatory hierarchy for digit 1 evolutionary adaptations, such as opposable thumbs. This study illuminates Shh as a trigger for a relay network that becomes rapidly self-sustaining, with mechanistic relevance for limb development, regeneration, and evolution.

developmental biology↗

bioRxiv2018

Mutual transcriptional repression between Gli3 and Hox13 genes determines the anterior-posterior asymmetry of the autopod

In the present study we have investigated the molecular causes of the absence of digit 1 in the Hoxa13 mutant and why the absence of Hoxa13 protein, whose expression spans the entire autopod, specifically impacts the anterior-most digit. We show that in the absence of Hoxa13, the expression of Hoxd13 does not extend into the anterior mesoderm consequently leaving the presumptive territory of digit1 devoid of distal Hox expression and providing an explanation for the agenesis of digit 1. We provide compelling evidence that the lack of Hoxd13 transcription in the anterior mesoderm is due to increased Gli3R activity, in turn resulting from the loss of transcriptional repression exerted by Hoxa13 on Gli3. Our results are compatible with a mutual transcriptional repression between Gli3 and Hox13 genes that determines the anterior-posterior asymmetry of the autopod.

developmental biology↗