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Biology subjects

Luke M Noble

Publications and source records attributed to Luke M Noble.

2 recordsLinked to original sources

The genetic basis of natural variation in C. elegans telomere length

Telomeres are involved in the maintenance of chromosomes and the prevention of genome instability. Despite this central importance, significant variation in telomere length has been observed in a variety of organisms. The genetic determinants of telomere-length variation and their effects on organismal fitness are largely unexplored. Here, we describe natural variation in telomere length across the Caenorhabditis elegans species. We identify a large-effect variant that contributes to differences in telomere length. The variant alters the conserved oligosaccharide/oligonucleotide-binding fold of POT-2, a homolog of a human telomere-capping shelterin complex subunit. Mutations within this domain likely reduce the ability of POT-2 to bind telomeric DNA, thereby increasing telomere length. We find that telomere-length variation does not correlate with offspring production or longevity in C. elegans wild isolates, suggesting that naturally long telomeres play a limited role in modifying fitness phenotypes in C. elegans.

Genetics

A plastic vegetative growth threshold governs reproductive capacity in Aspergillus nidulans

Threshold-limited ontogenic phases separating somatic growth from reproduction are a common feature of cellular life. Long recognized for flowering plants and animals, this life-history component may also be prevalent among multicellular fungi. We establish the environmental and genetic basis of developmental competence, the capacity to respond to induction of asexual development, in the model filamentous saprotroph Aspergillus nidulans. Density and pH are critical parameters for competence timing, and we identify five genes with heterochronic effects through genetic screens and candidate mutagenesis, including the conserved GTPase RasB and ambient pH sensor PalH. Inheritance of competence timing is quantitative, semi-dominant, transgressive, and extremely variable among progeny. Transcriptional profiling over competence acquisition demonstrates substantial activity in metabolic and signaling networks, highly concordant across species, and a wave of gene expression around centromeres indicative of chromatin remodeling. Competence, likely determined by species-specific endogenous hormones and metabolic capacity, governs much of biology associated with the mature fungal form - asexual and sexual reproduction, secondary metabolism, and, in some species, pathogenesis - and provides a new model for nutrient-limited life-history phases and their elaboration from unicellular origins.

Developmental Biology