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Lubba, C. H.

Publications and source records attributed to Lubba, C. H..

2 recordsLinked to original sources

catch22: CAnonical Time-series CHaracteristics

Capturing the dynamical properties of time series concisely as interpretable feature vectors can enable efficient clustering and classification for time-series applications across science and industry. Selecting an appropriate feature-based representation of time series for a given application can be achieved through systematic comparison across a comprehensive time-series feature library, such as those in the hctsa toolbox. However, this approach is computationally expensive and involves evaluating many similar features, limiting the widespread adoption of feature-based representations of time series for real-world applications. In this work, we introduce a method to infer small sets of time-series features that (i) exhibit strong classification performance across a given collection of time-series problems, and (ii) are minimally redundant. Applying our method to a set of 93 time-series classification datasets (containing over 147 000 time series, including biomedical datasets) and using a filtered version of the hctsa feature library (4791 features), we introduce a generically useful set of 22 CAnonical Time-series CHaracteristics, catch22. This dimensionality reduction, from 4791 to 22, is associated with an approximately 1000-fold reduction in computation time and near linear scaling with time-series length, despite an average reduction in classification accuracy of just 7%. catch22 captures a diverse and interpretable signature of time series in terms of their properties, including linear and non-linear autocorrelation, successive differences, value distributions and outliers, and fluctuation scaling properties. We provide an efficient implementation of catch22, accessible from many programming environments, that facilitates feature-based time-series analysis for scientific, industrial, financial and medical applications using a common language of interpretable time-series properties.

bioinformatics

Efficient peripheral nerve firing characterisation through massive feature extraction

Peripheral nerve decoding algorithms form an important component of closed-loop bioelectronic medicines devices. For any decoding method, meaningful properties need to be extracted from the peripheral nerve signal as the first step. Simple measures such as signal amplitude and features of the Fourier power spectrum are most typically used, leaving open whether important information is encoded in more subtle properties of the dynamics. We here propose a feature-based analysis method that identifies changes in firing characteristics across recording sections by unsupervised dimensionality reduction in a high-dimensional feature-space and selects single efficiently implementable estimators for each characteristic to be used as the basis for a better decoding in future bioelectronic medicines devices.

bioengineering