bioRxiv Science⌕ Search

Biology subjects

Lu, J.-Z.

Publications and source records attributed to Lu, J.-Z..

4 recordsLinked to original sources

Soil invertebrate biomass estimation from image-derived body area and contour length

1. Soil invertebrate biomass is closely linked to ecosystem processes, yet its routine quantification remains constrained by the effort required to weigh large numbers of small individuals. Length-mass relationships provide an indirect alternative, but body length can be difficult to standardise and extract automatically from images of curved, coiled or contracted organisms. Projected body area may provide a more tractable image-derived predictor, but its performance across diverse soil-faunal taxa and at the community scale remains insufficiently evaluated. 2. Here, we developed a framework using projected body area and contour length to estimate fresh and dry mass from measurements of 1,792 soil invertebrates representing 15 higher-level taxa. We fitted taxon-specific models for six well-represented groups and general models across taxa, and evaluated predictive performance using leave-one-out cross-validation. We then assessed cross-dataset transferability by comparing our data with those of Lemoine et al. (2026) and pooled the two datasets to derive combined models. Finally, we tested whether individual predictions could be scaled to independently measured community biomass. 3. Taxon-specific models generally reduced prediction error relative to general models, with mean absolute percentage error (MAPE) values of 6.9-37.3% for fresh mass and 7.6-30.2% for dry mass. General models retained MAPEs of 27.2% and 22.4%, respectively. Comparisons of our dataset with that of Lemoine et al. (2026) showed no detectable differences in six of eight taxon-by-mass slopes. Although intercepts frequently differed, no overall dataset effect was detected after accounting for taxa. Pooling both datasets broadened model development, while taxon-specific models generally retained lower error than the combined general model. Finally, community-level predictions tracked measured biomass across all model sets (R2 = 0.87-0.99), but absolute error varied among models and faunal groups (MAPE = 9.6-52.5%). 4. Body area and contour length extracted from images therefore provide a practical basis for scaling soil invertebrate biomass estimation from individuals to communities. Integration with automated imaging and segmentation tools such as flatbug, BIODISCOVER and CollembolAI could extend soil invertebrate monitoring at larger scales beyond abundance and taxonomic composition to biomass, while providing scalable inputs for analyses of food webs and general ecosystem ecology.

ecology↗

Relaxed selection and horizontal gene transfer fuel underwater adaptation in a water spider

Spiders have primarily adapted to terrestrial life, yet a number of species have made evolutionary transitions to marine and freshwater environments. While its physiological and behavioral adaptations have been characterized, the genetic basis of semi-aquatic and aquatic adaptation in spiders remains poorly understood. Here, we provide a high-quality, chromosome-level genome assembly for the aquatic spider Argyroneta aquatica, alongside a reference transcriptome for the semi-aquatic spider Desis martensi. We performed comparative genomes analyses of 22 spider species, including a unique aquatic spider, two semi-aquatic spiders and 19 terrestrial spider species, with a focus on those in the marronoid clade. By integrating morphological, phylogenomic, comparative genomic, transcriptomic, and metabolomic analyses, we explored the genomic adaptations of aquatic and semi-aquatic spiders. Phylogenomic analysis suggests that aquatic and semi-aquatic spiders have independently evolved from their terrestrial ancestors and represent divergent evolutionary routes We found hundreds of genes tend to experience relaxed selection, positive selection, and evidence of horizontal gene transfer (HGT) associated with the transition to aquatic and semi-aquatic life in spiders. These genes are associated with respiratory, osmoregulatory, fat metabolism and digestion, hypoxia, and thermal functions, putatively facilitate the adaptations to diverse underwater life. Altogether, our findings highlight the divergent evolutionary mechanisms enabling spiders to thrive in diverse aquatic environments, providing insights into the genomic basis of adaptations to semi-aquatic and aquatic habitats.

genomics↗

High consistency of trophic niches in soil microarthropod species (Oribatida, Acari) across soil depth and forest type

Individuals of species may differ in resource use within and between populations. High intraspecific variation in resource use may hamper the co-existence of species in natural communities. To better understand the intraspecific variation in trophic niches of oribatid mites (Oribatida, Acari), we quantified stable isotope ratios of carbon ({delta}13C) and nitrogen ({delta}15N) of 40 Oribatida species that co-occurred in litter and soil of five forest types (European beech, Douglas fir, Norway spruce, two beech-conifer mixed forests) covering a range of environmental conditions. We found that although stable isotopes in litter and soil varied among forest types, {delta}13C and {delta}15N values of Oribatida and their trophic niches were remarkably stable between litter and soil, and also among forest types. We considered four trophic guilds of Oribatida representing the guild composition of the regional species pool; notably, trophic niches of Oribatida guilds also did not vary with soil depth. Furthermore, {delta}13C of Oribatida was more enriched (detrital shift) in European beech than in coniferous forests, but {delta}15N of Oribatida did not vary among forest types, indicating that basal resources of Oribatida are variable, but trophic positions are highly consistent across forest ecosystems. We conclude that trophic positions of Oribatida species and guilds are consistent across different forest types, and Oribatida species occupy virtually identical trophic niches irrespective of the soil depth they are colonizing. Overall, the results suggest that low intraspecific variability facilitates Oribatida niche differentiation and species coexistence.

ecology↗

Mixing conifers and deciduous trees (Fagus sylvatica): response of soil microorganisms

Tree - soil interactions depend on environmental conditions. Planting trees may strongly impact microorganisms in particular at unfavorable site conditions, compromising the functioning of soil microorganisms. To understand the effects of tree species composition on soil microorganisms, we quantified structural and functional responses of soil microorganisms to forest types across environmental conditions using substrate-induced respiration and phospholipid fatty acid analyses. Five forest types were studied including pure stands of native European beech (Fagus sylvatica), range expanding Norway spruce (Picea abies), and non-native Douglas-fir (Pseudotsuga menziesii), as well as the two conifer - beech mixtures. We found that microbial functioning strongly depends on site conditions, in particular on soil nutrients. At nutrient-poor sites, soil microorganisms were more stressed in pure and mixed coniferous forests, especially in Douglas-fir, compared to beech forests. By contrast, microbial structure and functional indicators in beech forests varied little with site conditions, likely because beech provided high amounts of root-derived resources for microbial growth. Since soil microbial communities are sensitive to Douglas-fir, planting Douglas-fir may compromise ecosystem functioning in particular at nutrient-poor sites. Overall, root-derived resources are important for determining the structure and functioning of soil microbial communities, and soil microorganisms sensitively respond to plantations containing tree species that may differ in the provisioning of these resources.

ecology↗