Biology subjects

Lozada-Chavez, I.

Publications and source records attributed to Lozada-Chavez, I..

3 recordsLinked to original sources

bioRxiv2026

Evidence of thermal selection from experimental evolution in the arboviral vector Aedes albopictus

The extent to which phenotypic plasticity and adaptation are coupled during ectotherm thermal evolution is poorly understood. We carried out thermal experimental evolution for 20 generations in the arboviral vector Aedes albopictus, an efficient invasive species that has newly conquered climatically diverse regions in the past few decades. During acclimation (one generation of evolution) we saw accelerated development and increased reproduction that traded off against survival. After only another 10 generations, we saw adaptation in the form of major changes in mosquito fitness, metabolism and gene expression, revealing the consolidation of a temperature-dependent trade-off between reproduction and longevity. These shifts demonstrate that Ae. albopictuscan adapt at the pace of warming. When selection was relaxed, most of the thermally shifted phenotypes reverted to control levels, revealing the importance of plasticity after prolonged evolution. Furthermore, 250 warm evolution-altered genes did not return to control levels. These genes exhibited significant negative correlation between mean and variance in warm-evolved mosquitoes, but a two-fold variance reduction without mean change in relaxed-selection mosquitoes. Both signals are consistent with the action of selection operating on a polygenic trait architecture. Ecological modelling identified egg-to-adult viability as the primary driver of thermal reproductive success, highlighting juvenile stages as a crucial control target under continued warming.

evolutionary biology↗

bioRxiv2023

Molecular signature of domestication in the arboviral vector Aedes aegypti

BackgroundDomestication is a complex, multi-stage and species-specific process that results in organisms living close to humans. In the arboviral vector Aedes aegypti adaptation to living in proximity with anthropogenic environments has been recognized as a major evolutionary shift, separating a generalist form, Aedes aegypti formosus (Aaf), from the domestic form Aedes aegypti aegypti (Aaa), which tends to deposit eggs artificial containers and bite humans for a blood meal. These behaviors enhance the mosquito vectorial capacity. The extent to which domestication has impacted the Ae. aegypti genome has not been thoroughly investigated yet. ResultsTaking advantage of two forms distinct and historically documented geographic distributions, we analyzed the genomes of 634 worldwide Ae. aegypti mosquitoes. Using more than 300 million high-confidence SNPs, we found a unique origin for all out-of-Africa Ae. aegypti mosquitoes, with no evidence of admixture events in Africa, apart from Kenya. A group of genes were under positive selection only in out-of-Africa mosquitoes and 236 genes had nonsynonymous mutations, occurring at statistically different frequencies in Aaa and Aaf mosquitoes. ConclusionWe identified a clear signal of genetic differentiation between Aaa and Aaf, circumscribed to a catalogue of candidate genes. These "Aaa molecular signature" genes extend beyond chemosensory genes to genes linked to neuronal and hormonal functions. This suggests that the behavioral shift to domestication may rely on the fine regulation of metabolic and neuronal functions, more than the role of a few significant genes. Our results also provide the foundation to investigate new targets for the control of Ae. aegypti populations.

evolutionary biology↗

bioRxiv2018

Genome-wide features of introns are evolutionary decoupled among themselves and from genome size throughout Eukarya

The impact of spliceosomal introns on genome and organismal evolution remains puzzling. Here, we investigated the correlative associations among genome-wide features of introns from protein-coding genes (e.g., size, density, genome-content, repeats), genome size and multicellular complexity on 461 eukaryotes. Thus, we formally distinguished simple from complex multicellular organisms (CMOs), and developed the program GenomeContent to systematically estimate genomic traits. We performed robust phylogenetic controlled analyses, by taking into account significant uncertainties in the tree of eukaryotes and variation in genome size estimates. We found that changes in the variation of some intron features (such as size and repeat composition) are only weakly, while other features measuring intron abundance (within and across genes) are not, scaling with changes in genome size at the broadest phylogenetic scale. Accordingly, the strength of these associations fluctuates at the lineage-specific level, and changes in the length and abundance of introns within a genome are found to be largely evolving independently throughout Eukarya. Thereby, our findings are in disagreement with previous estimations claiming a concerted evolution between genome size and introns across eukaryotes. We also observe that intron features vary homogeneously (with low repetitive composition) within fungi, plants and stramenophiles; but they vary dramatically (with higher repetitive composition) within holozoans, chlorophytes, alveolates and amoebozoans. We also found that CMOs and their closest ancestral relatives are characterized by high intron-richness, regardless their genome size. These patterns contrast the narrow distribution of exon features found across eukaryotes. Collectively, our findings unveil spliceosomal introns as a dynamically evolving non-coding DNA class and strongly argue against both, a particular intron feature as key determinant of eukaryotic gene architecture, as well as a major mechanism (adaptive or non-adaptive) behind the evolutionary dynamics of introns over a large phylogenetic scale. We hypothesize that intron-richness is a pre-condition to evolve complex multicellularity.

evolutionary biology↗