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Longmore, S.

Publications and source records attributed to Longmore, S..

3 recordsLinked to original sources

DroneMegaDetector, A Generalised Model For Detecting Large Mammals In Aerial Imagery

Large-scale drone surveys can generate imagery across substantial geographic areas, but automated analysis remains challenging because animal appearance, target density, imaging conditions and target scale can vary considerably between surveys. We present a general-purpose RF-DETR Medium object detector developed for large-scale aerial drone imagery and evaluate its ability to generalise across taxa, environments and survey conditions. Unlike specialist counting systems that primarily return point detections, the proposed detector produces explicit bounding boxes, providing a spatial representation that can support counting as well as downstream detection, classification and tracking workflows. We evaluated the detector on an internal held-out test set and independent external datasets spanning cattle, birds, caribou and hippopotamuses, together with imagery acquired under substantially different survey conditions. On the comparative Cattle dataset, RF-DETR matched OWL across the reported point-localisation and counting metrics, while on Caribou it achieved almost identical point-based detection performance and similar aggregate counting error. Performance varied across the broader external benchmark, with reduced transfer to unseen avian imagery and differences between models across datasets. At high altitude on SAVMAP, all evaluated approaches experienced substantial performance degradation, demonstrating a shared limitation associated with small target scale. Overall, the results show that a general-purpose detector trained on heterogeneous drone imagery can provide competitive localisation and counting performance across diverse datasets while retaining explicit bounding-box outputs. The trained model weights and inference code are provided online to support reproducible large-scale aerial wildlife monitoring and further development of drone-based computer-vision workflows.

ecology↗

Comparison of a computer vision model to a human observer in detecting African mammals in camera trap images within a safari park

Remote monitoring technologies are increasingly utilized in animal research for their capacity to enhance data collection efficiency. However, they present challenges, and as such researchers have resorted to utilizing deep learning to automatically classify acquired data therefore expediting the review process. While this practice is common in field studies it has been less adopted in zoo monitoring. In this paper we deploy the YOLOv10x model to monitor four species at Knowsley Safari in the UK: African lions (Panthera leo), Southern white rhino (Ceratotherium simum simum), Grevys zebra (Equus grevyi) and Olive baboons (Papio anubis). Camera trap images were processed and classified using the Conservation AI desktop application. The raw images were saved to facilitate the comparative analysis of the models predictions against the findings of human observed images. Processing time for both methods was compared using a subset of 3015 images with Conservation AI, reducing the time required to classify the images by 82% compared to a human analyst. Confusion matrix results showed high accuracy rates for all four species (>0.90). Analysis of count data showed significant differences in three species, where the human observer recorded more observations of each than Conservation AI (lion, rhino, baboon p<0.005). However, no significant difference was seen in zebra (p>0.05). A strong positive correlation in count data between both methodologies was seen in all species; baboon (rho=0.955, p<0.005), lion (rho = 0.969, p<0.005), rhino (rho=0.887, p<0.005) and zebra (rho=0.843, p<0.005). This study highlights the potential for these technologies as a monitoring system in zoos.

animal behavior and cognition↗

Specialised RNA decay fine-tunes monogenic antigen expression in African trypanosomes

Antigenic variation is a sophisticated immune evasion strategy employed by many pathogens. Trypanosoma brucei expresses a single Variant-Surface-Glycoprotein (VSG) from a large genetic repertoire, which they periodically switch throughout an infection. Co-transcribed with the active-VSG within a specialised nuclear body are expression-site-associated-genes (ESAGs), involved in important host-parasite interactions, including protecting the parasite from human serum lytic effects, modulating the hosts innate immune response and uptake of essential nutrients. Despite expression within the same polycistron, there is a significant differential expression between ESAGs and VSGs (>140-fold), however, the regulatory mechanism has remained elusive for decades. Here, using a combination of genetic tools, super resolution microscopy, proteomics and transcriptomics analyses, we identified three novel proteins, which are recruited in a hierarchical manner, forming discreet sub-nuclear condensates that are developmentally regulated and negatively regulate ESAG transcripts. Among them, Expression-Site-Body-specific-protein-2 (ESB2) contains a nuclease domain that shares structural similarity to the endonuclease domain found in SMG6, a critical component of nonsense mediated decay in mammals. Mutation of key residues required for the nuclease activity impaired ESB2 localisation and function. Overall, our findings reveal a novel mechanism of post-transcriptional regulation and shed light on how specialised RNA decay can regulate expression of specific genes.

molecular biology↗