Lize, A. | bioRxiv Science

bioRxiv2025

A Multi-Taxa Approach to Estuarine Biomonitoring: Assessing Vertebrate Biodiversity and Ecological Continuity using Environmental DNA Metabarcoding in the Rance River (Brittany, France)

Estuaries are ecologically vital yet highly impacted ecosystems that serve as transitional zones between land and sea. Monitoring their biodiversity is essential but challenging due to their dynamic nature and the transient presence of many species. Traditionally actinopterygian monitoring in these systems still relies on conventional and intrusive methods such as gill nets and trawls. Environmental DNA (eDNA) metabarcoding offers a non-invasive, multi-taxa alternative that can complement these traditional approaches. Here, we applied an eDNA-based metabarcoding approach to characterize vertebrate diversity in the Rance Estuary, located in the Brittany Region of France. Water samples were collected from five stations spanning marine to freshwater environments. Special attention was given to two stations located upstream and downstream of the tidal power plant (TPP) dam to assess its potential impact on ecological continuity. We detected a total of 124 distinct vertebrate MOTUs--comprising actinopterygians, birds, mammals, and amphibians. Taxonomic composition followed the estuarine gradient, with Jaccard dissimilarity increasing with distance from the sea and largely driven by species turnover. While taxonomic and phylogenetic diversity remained relatively stable across the vertebrate community, functional diversity revealed an increasing terrestrial influence. For actinopterygians, taxonomic diversity decreased upstream, whereas phylogenetic and functional diversity indicated fine-scale structuring, even among nearby stations. This approach enabled the development of biodiversity metrics and facilitated comparisons with previous actinopterygian monitoring surveys in the same area based on conventional methods (scientific fishing using nets and dredges). Our results emphasise the potential of eDNA for holistic estuarine biomonitoring and establish a valuable baseline for future non-invasive assessments.

ecology↗

bioRxiv2019

A potential role for the gut microbiota in the specialisation of Drosophila sechellia to its toxic host noni (Morinda citrifolia)

Adaptation to a novel food source can have significant evolutionary advantages. The fruit fly, Drosophila sechellia, is a specialist of the toxic plant noni (Morinda citrifolia). Little is known as to how D. sechellia has become resistant to the toxins in the fruit - comprised predominantly of octanoic acid - but to date, the behavioural preferences for the fruit and genetic architecture underlying them, have been well studied. Here, we examine whether the gut microbiota could have played a role in adaptation to the fruit. In the first series of experiments, we examine the gut microbiota of wild-type, laboratory reared flies and characterise the gut microbiota when reared on the natural host plant, versus a standard Drosophila diet. We show a rapid transition in the core bacterial diversity and abundance within this species and discover sole precedence of Lactobacillus plantarum when reared on M. citrifolia. We also discover that flies reared on a laboratory diet are more likely to carry bacterial pathogens such as Bacillus cereus, although their function in Drosophila is unknown. Flies reared on a laboratory diet have a significantly reduced weight but with no impact on the risk of death before adulthood, when compared to the wild noni diet. In the second series of experiments, we examine the potential role of the gut microbiota in adaptation to octanoic acid resistance in this species and its sister species, Drosophila melanogaster, to which the fruit is usually fatal. We use a combination of methods to analyse resistance to octanoic acid by conducting life history analysis, behavioural assays and bacterial analysis in both D. sechellia and D. melanogaster. We find that by creating experimental evolution lines of D. melanogaster supplemented with gut microbiota from D. sechellia, we can decrease D. melanogaster aversion to octanoic acid, with the flies even preferring to feed on food supplemented with the acid. We suggest this represents the first step in the evolutionary and ecological specialisation of D. sechellia to its toxic host plant, and that the gut microbiota, Lactobacillus plantarum in particular, may have played a key role in host specialisation.

evolutionary biology↗