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Liu, X. L.

Publications and source records attributed to Liu, X. L..

6 recordsLinked to original sources

Post-Learning Reactivation of Memories for Naturalistic Continuous Experiences

Memories are not static records of the past; rather, the act of remembering can change how an event is recalled. Intriguingly, several studies also suggest that memories may be reactivated during rest. However, reactivation has largely been studied for spatial tasks and discrete stimuli, and we know little about whether spontaneous reactivation occurs for long timescale naturalistic events and how reactivation affects retention. Using fMRI, we show that neural activity patterns in the hippocampus and the Default Mode Network during encoding of narrative events were spontaneously reactivated during rest. Contrary to predictions, reactivation did not strengthen recall of movie details, and instead exploratory analyses suggested that reactivation in the hippocampus was associated with more gist-like recall one week later. These findings support the idea that memories for complex events may be spontaneously reactivated, but they suggest that rather than simply strengthening episodic memories, reactivation might help transform them.

neuroscience↗

Memory out of context: Spacing effects and decontextualization in a computational model of the medial temporal lobe

Some neural representations change across multiple timescales. Here we argue that modeling this "drift" could help explain the spacing effect (the long-term benefit of distributed learning), whereby differences between stored and current temporal context activity patterns produce greater error-driven learning. We trained a neurobiologically realistic model of the entorhinal cortex and hippocampus to learn paired associates alongside temporal context vectors that drifted between learning episodes and/or before final retention intervals. In line with spacing effects, greater drift led to better model recall after longer retention intervals. Dissecting model mechanisms revealed that greater drift increased error-driven learning, strengthened weights in slower-drifting temporal context neurons (temporal abstraction), and improved direct cue-target associations (decontextualization). Intriguingly, these results suggest that decontextualization -- generally ascribed only to the neocortex -- can occur within the hippocampus itself. Altogether, our findings provide a mechanistic formalization for established learning concepts such as spacing effects and errors during learning.

neuroscience↗

A small H2O-soluble ingredient of royal jelly lower cholesterol levels in liver cells by suppressing squalene epoxidase

Excessive cholesterol in the liver is harmful for our health and may cause many diseases, such as fatty liver disease. Many studies in human and animal models have reported that royal jelly (RJ) can be used to treat atherosclerosis. However, the real mechanisms behind this action is unclear. In this study, we investigated the effectivity of RJ on gene expression of squalene epoxidase (SE) a major enzyme involved in cholesterol biosynthesis in HepG2 cells. We found that the expression of SE was decreased in response to RJ treatment. We also found that the origin of the RJ affected its strength. To find out the active ingredient of RJ in cholesterol suppression, we separated RJ into two parts based on the molecular weights using ultrafiltration membrane. We found that the fraction < 10kDa from RJ had comparable effect on SE expression, especially its water-soluble part. Taken together, we think RJ suppresses cholesterol by decreasing SE gene expression in liver. The active ingredient of RJ in this action is < 10kDa in water-soluble form.

cell biology↗

Correcting the Hebbian Mistake: Toward a Fully Error-Driven Hippocampus

The hippocampus plays a critical role in the rapid learning of new episodic memories. Many computational models propose that the hippocampus is an autoassociator that relies on Hebbian learning (i.e., "cells that fire together, wire together"). However, Hebbian learning is computationally suboptimal as it modifies weights unnecessarily beyond what is actually needed to achieve effective retrieval, causing more interference and resulting in a lower learning capacity. Our previous computational models have utilized a powerful, biologically plausible form of error-driven learning in hippocampal CA1 and entorhinal cortex (EC) (functioning as a sparse autoencoder) by contrasting local activity states at different phases in the theta cycle. Based on specific neural data and a recent abstract computational model, we propose a new model called Theremin (Total Hippocampal ERror MINimization) that extends error-driven learning to area CA3 -- the mnemonic heart of the hippocampal system. In the model, CA3 responds to the EC monosynaptic input prior to the EC disynaptic input through dentate gyrus (DG), giving rise to a temporal difference between these two activation states, which drives error-driven learning in the EC[->]CA3 and CA3{leftrightarrow}CA3 projections. In effect, DG serves as a teacher to CA3, correcting its patterns into more pattern-separated ones, thereby reducing interference. Results showed that Theremin, compared with our original model, has significantly increased capacity and learning speed. The model makes several novel predictions that can be tested in future studies. Author SummaryExemplified by the famous case of patient H.M. (Henry Molaison) who had his hippocampus surgically removed, the hippocampus is critical for learning and remembering about everyday events -- what is typically called "episodic memory." The dominant theory for how it learns is based on the intuitive principle stated by Donald Hebb in 1949, that neurons that "fire together, wire together" -- when two neurons are active at the same time, the strength of their connection increases. We show in this paper that using a different form of learning based on correcting errors (error-driven learning) results in significantly improved episodic memory function in a biologically-based computational model of the hippocampus. This model also provides a significantly better account of behavioral data on the testing effect, where learning by testing with partial cues is better than learning with the complete set of information.

neuroscience↗

Retrieval Practice Facilitates Judgments of Learning Through Multiple Mechanisms

Prior studies have shown that predictions of subsequent performance (i.e., Judgments of Learning, JoLs) following practice tests are more accurate than those following re-study. The majority of studies have suggested that retrieval practice allows people to base their predictions on the current retrieval outcomes so that they assign a higher likelihood of remembering the answers with high confidence. We speculated that other information made available through retrieval practice might also be important for JoLs. In the present study, we asked participants to study word pairs and undergo either a practice test or re-study. Two testing formats (cued-recall and multiple choice) were administrated for practice tests in two separate experiments. After each practice trial, participants rated their confidence in the current retrieval accuracy (test) or confidence in acquisition (re-study), followed by a JoL rating where participants predicted their performance in the final test one day later. The results of both experiments showed that the correlation between JoL ratings and the final accuracy was higher for trials practiced with testing. Moreover, using mediation analyses, we found that this high correspondence was only partially mediated by participants confidence in practice tests. More importantly, the reaction time of retrieval also significantly mediated the correspondence between JoLs and the final accuracy, suggesting that participants were able to correctly base their JoLs on multiple sources of information that is made available through retrieval practice. We conclude that practice testing benefits JoLs through multiple mechanisms.

neuroscience↗

Engineering Genetically-Encoded Mineralization and Magnetism via Directed Evolution

Genetically encoding the synthesis of functional nanomaterials such as magnetic nanoparticles enables sensitive and non-invasive biological sensing and control. Via directed evolution of the natural iron-sequestering ferritin protein, we discovered key mutations that lead to significantly enhanced cellular magnetism, resulting in increased physical attraction of ferritin-expressing cells to magnets and increased contrast for cellular magnetic resonance imaging (MRI). The magnetic mutants further demonstrate increased iron biomineralization measured by a novel fluorescent genetic sensor for intracellular free iron. In addition, we engineered Escherichia coli cells with multiple genomic knockouts to increase cellular accumulation of various metals. Lastly to explore further protein candidates for biomagnetism, we characterized members of the DUF892 family using the iron sensor and magnetic columns, confirming their intracellular iron sequestration that results in increased cellular magnetization.

synthetic biology↗