Biology subjects

Liu, C. Y.

Publications and source records attributed to Liu, C. Y..

12 recordsLinked to original sources

bioRxiv2026

Distributed brain-spinal cord dynamics during micturition revealed by functional ultrasound imaging

Micturition relies on coordinated activity across distributed neural circuits spanning the brain and spinal cord, yet the spatiotemporal dynamics of these processes remain poorly understood. Disruption of these pathways in conditions such as spinal cord injury, Parkinson's disease, multiple sclerosis, and aging can lead to neurogenic bladder dysfunction. Here, we used functional ultrasound imaging (fUSI), a modality with high spatiotemporal resolution and single-trial sensitivity, to investigate central nervous system activity during micturition. In anesthetized rats undergoing controlled bladder filling and volitional voiding, we recorded power Doppler signals from either the brain or the lumbosacral spinal cord. We observed distinct, region-specific hemodynamic responses associated with micturition across multiple brain regions, including the thalamus, hypothalamus, midbrain, and neocortex - particularly sensorimotor and retrosplenial areas - as well as dorsal and ventral spinal cord circuits. Furthermore, population-level activity in these regions enabled accurate decoding of bladder pressure dynamics. These results provide a systems-level characterization of central nervous system activity during micturition and establish fUSI as a platform for developing neural interfaces to restore bladder control.

bioengineering↗

bioRxiv2026

Human single-neuron correlates of somatosensation

Understanding the neural correlates of consciousness poses a central challenge in neuroscience, with longstanding debate over which cortical areas underlie subjective sensory perception. In the tactile domain, posterior parietal cortex (PPC) and primary somatosensory cortex (S1) are candidate cortical substrates for neural correlates of consciousness due to their crucial roles in somatosensory processing. Yet whether and how these regions contribute to conscious tactile perception remains unclear. Here, to address this issue, we leveraged chronic intracortical recordings to simultaneously monitor large ensembles of single neurons in grasp related cortical areas from three participants with tetraplegia while natural vibrotactile stimuli were delivered to a sensate region of the upper limb. We demonstrate that an orchestration of neural activity emerged across the grasp-related parietal-frontal network at near-threshold perception. Within this distributed network, we then focused on PPC and S1. While S1 responses closely tracked the amplitude of the physical stimulus, PPC activity covaried more strongly with awareness and confidence. This single-neuron evidence reveals PPC and S1 have complementary neural codes with PPC transforming physical stimulation into conscious perception whereas S1 is more sensitive to stimulus amplitude.

neuroscience↗

bioRxiv2026

Functional ultrasound imaging through a human cranial window for mesoscopic mapping of motor effector encoding within the sensorimotor cortex

Understanding movement encoding within human cortical circuits has been essential for advancing brain computer interfaces (BCIs). However, there are limited minimally invasive, high resolution neurorecording methods sensitive enough to detect single-trial movement-correlated neural activity. Functional ultrasound imaging (fUSI) provides submillimeter spatial resolution of deep cortical tissue with high sensitivity and, when paired with acoustically transparent skull implants, enables transcutaneous recording of human neurovascular changes. Prior studies have used fUSI in participants with acoustically transparent skull implants for on-off task mapping and decoding. Here, we demonstrate fUSIs ability to reliably resolve multi-body-part and single digit movement encoding within the primary sensorimotor cortex in a participant with an acoustically transparent skull implant. We obtained fine-grained mappings of individual effector representation that were consistent with classic somatotopy for both multi-body-part and single digit movement. We were able to resolve single-trial event-related activity, enabling single-trial decoding of both conditions. Analysis of voxels important for decoding suggested differential encoding of single digit movement information across the different Brodmann areas. Finally, we show that these patterns can be approximated across different sessions, allowing for cross session decoding. These results establish that fUSI can reliably delineate somatotopically organized motor representations at submillimeter resolution, bridging a critical gap between invasive electrophysiology and noninvasive hemodynamic imaging in a human subject.

neuroscience↗

bioRxiv2026

Vascular and synaptic proteomes reveal blood-brain barrier disruption and postsynaptic remodeling in human temporal lobe epilepsy

Blood-brain barrier (BBB) dysfunction and mesial temporal lobe epilepsy (MTLE) are considered to be engaged in a pathological feedback loop, with the consequent worsening of both conditions. However, the molecular landscape of the disruptions at the synapse and the blood-brain barrier during MTLE remains poorly characterized. Here, we perform quantitative proteomics on paired brain microvessel and vessel-depleted postsynaptic density (PSD) enriched fractions isolated from the epileptic hippocampus and ipsilateral temporal pole of patients with drug-resistant MTLE. The microvessel fraction (1,541 proteins; 439 differentially expressed proteins (DEPs)) reveals loss of tight-junction and endothelial adhesion proteins together with pericyte markers, concurrent with a significant increase of fibrinogen, plasminogen, complement C3, GFAP, and enrichment for complement and coagulation cascades. The PSD enriched fraction (7,450 proteins; 1,881 DEPs) shows the consequences of BBB leakage with an increase of protein infiltration, alongside inflammatory and extracellular-matrix proteins, together with disruption of the pre- and postsynaptic signaling machinery and loss of GABAergic interneurons. Cross-referencing healthy-brain expression confirms that the dysregulation of the processes reflects disease-associated changes rather than regional differences. Immunohistochemistry confirms microvascular remodeling, pericyte loss, parenchymal fibrinogen extravasation, microglial activation and presynaptic marker depletion in the epileptic hippocampus. Ligand-receptor mapping reveals dysregulation of the neurovascular ECM-adhesion interface, with upregulated parenchymal ECM ligands and downregulated vascular integrin receptors. Network-proximity analyses nominate candidate disease-modifying compounds for reversing the combined vascular and synaptic MTLE signature. Together, these findings establish a molecular map of vascular and synaptic dysfunction in human MTLE.

neuroscience↗

bioRxiv2025

TNF signaling drives expansion of Reg4+ epithelial cells in colitis.

Reg4+ secretory cells are upregulated in colitis and promote epithelial repair, but their regulation is poorly understood. We show that TNF-TNFR1 signaling controls Reg4+ cell numbers in mouse and human colonoids and in vivo, with TNFR1 deficiency reducing these cells and TNF restoring them dose-dependently. In UC patients and DSS-colitis, REG4+ cells mark regenerating crypts, and persistent REG4, DUOX2, and TNFR1 expression identifies non-responders to anti-TNF therapy. These findings reveal a TNFR1-dependent mechanism regulating Reg4+ cells and suggest potential strategies to improve therapeutic responses in IBD.

cell biology↗

bioRxiv2025

TNF Receptor 1 regulates colonic mesenchymal cell diversity and the epithelial stem cell niche.

BACKGROUND & AIMSAnti-tumor necrosis factor (anti-TNF) is a mainstay of inflammatory bowel disease (IBD) therapy but fails in many patients. Although TNF has pro-inflammatory effects, depletion of TNF receptor 1 (TNFR1) paradoxically exacerbates chronic colitis. Because colitis induces remodeling of mesenchymal cell populations, which provide a niche for epithelial stem cells involved in mucosal healing, we hypothesized that TNFR1 promotes colonic mesenchymal cell diversity and stem cell niche function. METHODSMesenchymal TNFR1 function was studied using TNFR1-/-, platelet derived growth factor receptor alpha (PDGFR)-Cre;TNFR1fl/fl mice, and mixed-genotype mesenchymal-epithelial co-cultures. Mesenchymal cell diversity and gene function were assessed using single-cell RNA-Seq of primary colonic myofibroblasts (CMFs) and via anti-integrin A6 (ITGA6) antibody treatment and exogenous R-spondin 3 (RSPO3) supplementation. RESULTSTNFR1-/- mesenchyme exhibits reduced cell diversity, with specific depletion of specialized TNF- and interferon-signaling pericryptal cell-type. Deletion of TNFR1 in the pericryptal mesenchyme diminished the (PDGFR)+ CMF population and reduced RSPO3 expression, but increased ITGA6 expression relative to controls (TNFR1+/-). Moreover, inhibition of ITGA6 reversed the proliferative and migratory phenotype of TNFR1-/- CMFs and restored expression of PDGFR and RSPO3. Co-cultures of colonoids with TNFR1-/- CMFs resulted in downregulation of stem cell marker expression; this was rescued by supplementation with RSPO3. Supporting the role for mesenchymal TNFR1 in regulating colonic epithelial stem cells, mice deficient for TNFR1 in PDGFR+ cells showed a 40% loss of Lgr5+ stem cells, consistent with the global TNFR1-deficient mouse. CONCLUSIONTNFR1-mediated signaling regulates specification and function of colonic mesenchyme, performing an integral role in the maintenance of the crypt stem cell population.

cell biology↗

bioRxiv2025

Resting State Functional Connectivity of the Marmoset Claustrum

The common marmoset (Callithrix jacchus) has been recently developed as a nonhuman primate model useful for studying behaviour, neurology, and higher-level cognitive processes considering their phylogenetic proximity to humans. Here, we investigated the resting state functional connectivity (RSFC) of the marmoset claustrum, a small, highly connected subcortical structure. Using an open resource of 234 functional MRI scans from awake marmosets, we found claustrum connectivity to the prefrontal cortex, posterior parietal cortex, temporal cortices, cingulate cortex, sensory cortices, limbic areas, basal ganglia, and cerebellum. We also found strong functional connectivity to regions and hubs involved in marmoset resting state networks. These findings demonstrate marmoset claustrum RSFC similar to previous human and rodent studies and validate the integration of marmosets into claustrum research.

neuroscience↗

bioRxiv2024

The human claustrum activates across multiple cognitive tasks

Cognitive control, the ability to manage information during purposeful actions, is crucial for everyday functioning and can become impaired in a variety of neuropsychiatric disorders. The claustrum, a subcortical brain structure, has recently been implicated in functional mechanisms underlying cognitive control. A current theory on the claustrums function, the Network Instantiation in Cognitive Control (NICC) model, proposes that the claustrum acts as a cortical network hub synchronizing distant parts of the brain to optimize task performance across cognitive domains. Testing this in this study, we examined the claustrum signal within a dataset (n = 55) that includes functional MRI (fMRI) of healthy participants engaged in four well-established cognitive tasks: the Stroop task, AX-continuous performance task (AX-CPT), cued task-switching, and Sternberg working memory task. Bilateral claustrum activation was observed during certain conditions and trial phases of all four tasks, particularly during active use of cognitive control, and coinciding with task-positive cortical network activations. These findings provide further support for the NICC model of claustrum function, demonstrating claustrum activation across multiple cognitive tasks, and potentially paving the way for new insights into how cognitive processes can become compromised in neuropsychiatric disorders.

neuroscience↗

bioRxiv2023

Faecalibacterium and Others may be able to Predict the Response of Infliximab in Patients with Ulcerative Colitis

Objective: To explore the impact of IFX on intestinal ecological imbalance in UC and the role of gut microbiota in predicting the response of IFX. Result: The clinical study included 14 patients with moderate to severe active UC who received IFX intervention. Fecal samples of UC patients who reached early clinical remission status during the active phase, after the first IFX intervention, and at 14 weeks were collected for 16S rDNA gene testing and microbial community analysis. Animal research will establish a UC rat model using TNBS, inject it intraperitoneally with IFX, and collect fecal samples from rats for 16S rDNA gene detection and microbial community analysis. IFX can improve the ecological imbalance environment in the intestine, including Trichospira, Roseburia, Faecalis, Coprococcus, Veillonella, Dialister, Streptococcus in the Firmicutes phylum, Fusobacterium, a member of the Fusobacterium phylum, and Akkermansia, a member of the Akkermansia phylum, may be biomarkers for predicting the response of biological agents. Conclusion: The presence of certain bacterial communities, such as Faecalibacterium, can be regarded as markers of ecological imbalance and can predict the response of biological agents.

microbiology↗

bioRxiv2022

A critical period for neurogenesis loss and cognitive decline in patients with mesial temporal lobe epilepsy patients

Mesial temporal lobe epilepsy (MTLE) is a syndromic disorder presenting with seizures and cognitive comorbidities. While seizure etiology is increasingly understood, the pathophysiological mechanisms contributing to cognitive decline and epilepsy progression remain less recognized. We have previously shown that adult hippocampal neurogenesis, a process contributing to visual spatial learning and memory in rodents, dramatically declines in MTLE patients with increased disease duration. Here, we investigate when multiple cognitive domains become effected by epilepsy disease duration and how human neurogenesis levels contribute to it. We find that intelligence, and verbal learning and memory decline at a critical period of 20 years disease duration. Surprisingly, the number of human immature neurons positively associate with auditory verbal, rather than visuospatial, learning and memory. Moreover, we uncover cognitive functions enriched to either immature or mature granule neurons and functions shared between them. Our study provides cellular evidence of how adult neurogenesis contributes to human cognition, and signifies an opportunity to advance regenerative medicine for patients with MTLE and other cognitive disorders. O_FIG O_LINKSMALLFIG WIDTH=108 HEIGHT=200 SRC="FIGDIR/small/507339v2_ufig1.gif" ALT="Figure 1"> View larger version (27K): org.highwire.dtl.DTLVardef@12d6c9forg.highwire.dtl.DTLVardef@13670aborg.highwire.dtl.DTLVardef@11efda3org.highwire.dtl.DTLVardef@19de537_HPS_FORMAT_FIGEXP M_FIG C_FIG

neuroscience↗

bioRxiv2021

Anal skin-like epithelium mediates colonic wound healing

Intestinal epithelial wound healing, which is essential for health, is compromised and represents a therapeutic target in inflammatory bowel disease (IBD). While studies have elucidated important subpopulations of intestinal epithelial cells in repair, these have yet to translate to therapies. Here, in mouse models of acute colitis, we demonstrate a distinct and essential source of wound-healing cells that re-epithelialize the distal colon. Using 3-d imaging, lineage tracing, and single-cell transcriptomics, we show that neighboring skin-like (squamous) cells of the anus rapidly migrate into the injured colon and establish a permanent epithelium of crypt-like morphology. These squamous cells derive from a small unique transition zone, at the boundary of colonic and anal epithelium, that resists colitis. The cells of this zone have a pre-loaded program of colonic differentiation and further upregulate key aspects of colonic epithelium during repair. Thus, heterologous cell-types at tissue junctions represent unique reserve cells capable of repair and plasticity.

developmental biology↗

bioRxiv2020

Sprouty2 limits intestinal tuft and goblet cell numbers through GSK3β-mediated restriction of epithelial IL-33.

Dynamic regulation of intestinal cell differentiation is crucial for both homeostasis and the response to injury or inflammation. Sprouty2, an intracellular signaling regulator, controls pathways including PI3K and MAPKs that are implicated in differentiation and are dysregulated in inflammatory bowel disease. Here, we asked whether Sprouty2 controls secretory cell differentiation and the response to colitis. We report that colonic epithelial Sprouty2 deletion led to expanded goblet and tuft cell populations. Sprouty2 loss induced PI3K/Akt signaling, leading to GSK3{beta} inhibition and epithelial interleukin (IL)-33 expression. In vivo, this resulted in increased stromal IL-13+ cells. IL-13 in turn induced tuft and goblet cell expansion in vitro and in vivo. Sprouty2 was downregulated by inflammation; this appeared to be a protective response, as VillinCre;Sprouty2F/F mice were resistant to DSS colitis. In contrast, Sprouty2 was elevated in colons of inflammatory bowel disease patients, suggesting that this protective epithelial-stromal signaling mechanism is lost in disease.

physiology↗