Biology subjects

Lisi, V.

Publications and source records attributed to Lisi, V..

5 recordsLinked to original sources

bioRxiv2026

Systematic analysis of RhoGAP expression and function in border cell morphology and migration

Rho family GTPases are central hubs in the signaling and cytoskeletal networks that govern cell morphology and behavior. GTPase-activating proteins (GAPs) inactivate them by accelerating GTP hydrolysis. However, a systematic analysis of GAPs in cell migration is lacking. Here, we report screens for RhoGAP expression and function in migratory Drosophila border cells. Constitutively active Cdc42, Rac, or Rho causes defects, demonstrating that negative regulation is critical. Integrating single-cell RNAseq with published datasets reveals that most of the 22 RhoGAPs are expressed in border cells. RNAi knockdown shows most RhoGAPs are functionally required. We developed automated image analysis tools to sensitively and objectively classify border cell morphologies, defining a normal morphological phase space. RhoGAP perturbations push clusters outside this range. In-depth analysis of RhoGAPp190 reveals that loss-of-function resembles Rho hyperactivation and gain-of-function resembles myosin II inhibition. Thus, complex spatiotemporal sculpting of RhoGTPase activities requires diverse RhoGAPs within a single cell type to control morphology and motility in vivo.

cell biology↗

bioRxiv2022

Molecular basis for antiviral activity of pediatric neutralizing antibodies targeting SARS-CoV-2 Spike receptor binding domain

Neutralizing antibodies (NAbs) hold great promise for clinical interventions against SARS-CoV- 2 variants of concern (VOCs). Understanding NAb epitope-dependent antiviral mechanisms is crucial for developing vaccines and therapeutics against VOCs. Here we characterized two potent NAbs, EH3 and EH8, isolated from an unvaccinated pediatric patient with exceptional plasma neutralization activity. EH3 and EH8 cross-neutralize the early VOCs and mediate strong Fc-dependent effector activity in vitro. Structural analyses of EH3 and EH8 in complex with the receptor-binding domain (RBD) revealed the molecular determinants of the epitope-driven protection and VOC-evasion. While EH3 represents the prevalent IGHV3-53 NAb whose epitope substantially overlaps with the ACE2 binding site, EH8 recognizes a narrow epitope exposed in both RBD-up and RBD-down conformations. When tested in vivo, a single-dose prophylactic administration of EH3 fully protected stringent K18-hACE2 mice from lethal challenge with Delta VOC. Our study demonstrates that protective NAbs responses converge in pediatric and adult SARS-CoV-2 patients.

microbiology↗

bioRxiv2020

Intimate functional interactions between TGS1 and the Smn complex revealed by an analysis of the Drosophila eye development

Trimethylguanosine synthase 1 (TGS1) is a conserved enzyme that mediates formation of the trimethylguanosine cap on several RNAs, including snRNAs and telomerase RNA. Previous studies have shown that TGS1 binds the Survival Motor Neuron (SMN) protein, whose deficiency causes spinal muscular atrophy (SMA). In addition, TGS1 depletion results in increased hTR levels and telomere elongation in human cells. Here, we analyzed the roles of the Drosophila orthologs of the human TGS1 and SMN genes. We show that the Drosophila TGS1 protein (dTgs1) physically interacts with all subunits of the Drosophila Smn complex (Smn, Gem2, Gem3, Gem4 and Gem5), and that a human TGS1 transgene rescues the mutant phenotype caused by dTgs1 loss. We demonstrate that both dTgs1 and Smn are required for viability of retinal progenitor cells and that downregulation of these genes leads to a reduced eye size. Importantly, overexpression of dTgs1 partially rescues the eye defects caused by Smn depletion, and vice versa. These results suggest that the Drosophila eye model can be exploited for screens aimed at the identification of genes and drugs that modify the phenotypes elicited by Tgs1 and Smn deficiency. These modifiers could help to devise new therapies for SMA and diseases caused by telomerase insufficiency.

genetics↗

bioRxiv2019

Cell population effects in a mouse tauopathy model identified by single cell sequencing

Neurodegenerative disorders are complex multifactorial diseases that have poorly understood selective vulnerabilities among discrete cell populations. We performed single cell RNA sequencing of whole hippocampi from the rTg4510 mouse tauopathy model, which expresses a P301L MAPT mutation at two time points--before and after the onset of pathology. One population of neurons showed a robust size reduction in both the young and the old transgenic animals. Differential expression of genes expressed in this group of neurons suggested an enrichment in granule cell neurons. We identified genes that characterize this population of neurons using Pareto optimization of the specificity and precision of gene pairs for the population of interest. The resulting optimal marker genes were overwhelmingly associated with neuronal projections and their expression was enriched in the dentate gyrus suggesting that the rTg4510 mouse is a good model for Picks disease. This observation suggested that the tau mutation affects the population of neurons associated with neuronal projections even before overt tau inclusions can be observed. Out of the optimal pairs of genes identified as markers of the population of neurons of interest, we selected Purkinje cell protein 4 (Pcp4+) and Syntaxin binding protein 6 (Stxbp6+) for experimental validation. Single-molecule RNA fluorescence in situ hybridization confirmed preferential expression of these markers and localized them to the dentate gyrus.

cell biology↗

bioRxiv2017

Enhanced neuronal regeneration in the CAST/Ei mouse strain is linked to expression of differentiation markers after injury

Peripheral nerve regeneration after injury requires a broad program of transcriptional changes. We investigated the basis for the enhanced nerve regenerative capacity of the CAST/Ei mouse strain relative to C57BL/6 mice. RNA sequencing of dorsal root ganglia (DRG) showed a CAST/Ei specific upregulation of Ascl1 after injury. Ascl1 overexpression in C57BL/6 mice DRG neurons enhanced their neurite outgrowth. Ascl1 is regulated by miR-7048-3p, which is down-regulated in CAST/Ei mice. Inhibition of miR-7048-3p enhances neurite outgrowth. Following injury, CAST/Ei neurons largely retained their mature neuronal profile as determined by single cell RNAseq, whereas the C57BL/6 neurons acquired an immature profile. These findings suggest that one facet of the enhanced regenerative phenotype is preservation of neuronal identity in response to injury.

molecular biology↗