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Lillsunde, P.

Publications and source records attributed to Lillsunde, P..

2 recordsLinked to original sources

Profiling of HeLa nucleoplasmic and nucleolar RNAs by Halo-seq proximity labeling

Subcellular RNA localization is a key regulator of gene expression, but transcriptome wide characterization of RNAs enriched in specific cellular compartments has been hindered by methodological limitations in throughput and spatial resolution. Halo-seq is an RNA proximity-labeling approach that enables the extraction of RNAs located near virtually any Halo-tagged bait protein. However, its broader application has been restricted by the limited availability of the required Halo ligand. Here we present a Halo-seq dataset profiling the nucleoplasmic and nucleolar transcriptomes of HeLa cells. Through experimental and computational validation, we demonstrate that our optimized Halo-seq protocol achieves high spatial specificity, enabling robust mapping of compartment-enriched RNA populations.

molecular biology↗

Nuclear genetic background influences the phenotype of the Drosophila tko25t mitochondrial protein-synthesis mutant

The Drosophila tko25t point mutation in the gene encoding mitoribosomal protein S12 produces a complex phenotype of multiple respiratory chain deficiency, developmental delay, bang-sensitivity, impaired hearing, sugar and antibiotic sensitivity and impaired male courtship. Its phenotypic severity was previously shown to be alleviated by inbreeding, and to vary with mitochondrial genetic background. Here we show similarly profound effects conferred by nuclear genetic background. We backcrossed tko25t into each of two standard nuclear backgrounds, Oregon R and w1118, the latter used as recipient line in many transgenic applications requiring selection for the white minigene marker. In the w1118 background, tko25t flies showed a moderate developmental delay and modest bang-sensitivity. In the Oregon R background, males showed longer developmental delay and more severe bang-sensitivity, and we were initially unable to produce homozygous tko25t females in sufficient numbers to conduct a meaningful analysis. When maintained as a balanced stock over 2 years, tko25tflies in the Oregon R background showed clear phenotypic improvement though were still more severely affected than in the w1118 background. Phenotypic severity did not correlate with the expression level of the tko gene. Analysis of tko25t hybrids between the two backgrounds indicated that phenotypic severity was conferred by autosomal, X-chromosomal and parent-of-origin dependent determinants. Although some of these effects may be tko25t-specific, we recommend that, in order to minimize genetic drift and confounding background effects, the genetic background of non-lethal mutants should be controlled by regular backcrossing, even if stocks are usually maintained over a balancer chromosome.

genetics↗