Biology subjects

Leger, E.

Publications and source records attributed to Leger, E..

4 recordsLinked to original sources

bioRxiv2025

Map simulator of tick abundance in heterogeneous agricultural landscapes

Among vector-borne diseases, tick-borne diseases (TBD) are a major concern for human health. Mapping the distribution of important tick species is thus a major challenge for efficient prevention. Due to its specific ecological requirements, Ixodes ricinus, the main tick species in Europe responsible for TBD transmission, lives mostly in woodlands but also at the interface between woodlands and pastures or crops and along hedgerows. At the landscape scale, extensive variations in tick densities are observed but remain poorly understood. In that aim, we built a statistical model to identify the landscape variables influencing the abundance of questing I. ricinus nymphs, using GLMM approaches and MCMC estimates. This model was fitted on a data set based on a field sampling of ticks conducted during 3 years in 2 different agricultural landscapes in northwest and southwest France, for a total of 5390 sampling units. Among 12 variables investigated, 4 were finally kept in the model: woodland perimeter, woodland distance, road distance and building perimeter. Then, we developed a R package that simulates the abundance of questing nymphs within a given agricultural landscape, taking into account the influence of the different habitats as determined by the above statistical model. The maps obtained as an output from this simulator will be a useful tool for visualizing TBD risk, notably for stake-holders involved in landscape management and public health decisions. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=88 SRC="FIGDIR/small/663759v1_ufig1.gif" ALT="Figure 1"> View larger version (46K): org.highwire.dtl.DTLVardef@f950aborg.highwire.dtl.DTLVardef@1f0f27org.highwire.dtl.DTLVardef@11bde05org.highwire.dtl.DTLVardef@8d2202_HPS_FORMAT_FIGEXP M_FIG C_FIG HighlightsIxodes ricinus abondance is influenced by landscape characteristics Tick sampling was carried out in heterogeneous agricultural landscapes Informative variables related to habitats were identified by statistical analysis Woodlands, roads and buildings influence tick densities The resulting model was used to build a simulator of tick at-risk zones

ecology↗

bioRxiv2024

Climate, weather, and geography shape seed mass variation and decline across western North America

Seeds are an essential reproductive strategy for most plants, and seed mass is predicted to respond to environmental factors, but we do not know if climate change-related size changes observed in other organisms will also be reflected in seed mass. We investigated the temporal, geographic, and environmental patterns that influence seed mass across 2,800 species of native plants from over 13,000 populations across the western US using information from two decades of collections from a national program, Seeds of Success. Most species exhibited low variation in seed mass, though some varied by up to 220% over their occupied area. Measures of climate change influenced seed mass in over 40% of species, which could be evidence of adaptation to new optimal values or maladaptive responses. Species with the most variation in seed mass were those collected across sites with a wide range of minimum temperatures, from more northern latitudes, and across a wide range of dates, and seeds were generally larger in areas where it was wetter and warmer. Seed mass declined for over half (55%) of species, and declined overall by an average of 0.012 mg each year, though there were many species-specific differences, including 17% of species increasing appreciably in mass. Relationships between seed mass and environmental variables varied widely in strength, identity, and direction among species, including those that often co-occur. These results support the need to continue native seed collections for conservation and restoration, as plant reproductive strategies may be shifting with changing climates.

ecology↗

bioRxiv2022

Sensitivity and specificity of human point-of-care circulating cathodic antigen (POC-CCA) test in African livestock for rapid diagnosis of schistosomiasis: a Bayesian latent class analysis

Schistosomiasis is a major neglected tropical disease (NTD) affecting both humans and animals. The morbidity and mortality inflicted upon livestock in sub-Saharan Africa has been largely overlooked, in part due to a lack of validated sensitive and specific tests, which do not require specialist training or equipment to deliver and interpret. Inexpensive, non-invasive, and sensitive diagnostic tests for livestock-use would also facilitate both prevalence mapping and appropriate intervention programmes. The aim of this study was to assess the sensitivity and specificity of the currently available point-of-care circulating cathodic antigen test (POC-CCA), designed for Schistosoma mansoni detection in humans, for the detection of intestinal livestock schistosomiasis caused by Schistosoma bovis and Schistosoma curassoni. POC-CCA, together with the circulating anodic antigen (CAA) test, miracidial hatching technique (MHT) and organ and mesentery inspection (for animals from abattoirs only), were applied to samples collected from 195 animals (56 cattle and 139 small ruminants (goats and sheep) from abattoirs and living populations) from Senegal. POC-CCA sensitivity varied by ruminant group and by location/parasite species: sensitivity was greater in Barkedji (cattle: mean 81% (95% credible interval (CrI): 55%-98%); small ruminants: 49% (29%-87%), where livestock were primarily infected by S. curassoni, than in Richard Toll (cattle: 62% (41%-84%); small ruminants: 12% (1%-37%), where S. bovis was the main parasite species. Mean POC-CCA specificity across sites in small ruminants was 91% (77%-99%) with little variation between locations/parasites (Barkedji: 91% (73%-99%); Richard Toll: 88% (65% - 99%). Specificity could not be assessed in cattle owing to the low number of uninfected cattle surveyed. Overall, our results indicate that, whilst the current POC-CCA does represent a potential diagnostic tool for animal schistosomiasis, future work is needed to develop a livestock-specific affordable and field-applicable diagnostic tests to enable determination of the true extent of livestock schistosomiasis. Author summarySchistosomiasis is a debilitating neglected tropical and zoonotic disease, infecting over 230 million people and multiple millions of animals worldwide, most notably amongst the poorest regions and populations. The potential contribution of livestock schistosomiasis to disease transmission in human populations has implications for the design of effective disease management and elimination programmes. However, our understanding of the true prevalence, transmission and impact of animal schistosomiasis is severely limited, in part due to a lack of inexpensive, accessible, sensitive and specific diagnostic tools. As a point-of-care circulating cathodic antigen (POC-CCA) diagnostic test is now in widespread use to assess intestinal schistosomiasis caused by Schistosoma mansoni in humans, we hypothesised that the same test could be used to detect livestock intestinal schistosomiasis caused by Schistosoma bovis and Schistosoma curassoni. The aim of this study was thus to evaluate the sensitivity and specificity of the POC-CCA for the detection of intestinal livestock schistosomiasis in Senegal. POC-CCA sensitivity varied by ruminant group and by location/parasite species, while POC-CCA specificity in small ruminants, at least, did not vary across sites. We conclude that the currently-available POC-CCA does represent a potential diagnostic tool for animal schistosomiasis, but that the factors determining test performance warrant further investigation.

pathology↗

bioRxiv2020

Using seedling phenotypic traits to select local seed sources for large-scale restoration: methods and outcomes in a Great Basin case study

Establishing plants from seed is often a limitation to restoration success in semi-arid systems. For restoration purposes, managers can either use widely-available commercial seeds, which are often sourced from far outside the seeding area, or take extra steps to use locally collected seeds. If local seeds have traits more conducive to seedling establishment in degraded sites, they could increase restoration success. Here, we asked whether wild-collected seeds of two native perennial grasses, Elymus elymoides and Poa secunda, had more favorable characteristics than commercial sources. Seeds were collected from four populations within the Winnemucca District of the Nevada Bureau of Land Management, which manages lands within the Great Basin, US. Collections were screened for seed and seedling characteristics associated with increased plant performance in invaded Great Basin systems, and we provide a detailed methodology for these measurements. Relative to commercial seeds, wild-collected seeds had more characteristics identified as beneficial for seedling establishment including earlier emergence, higher specific root length, more root tips, and smaller overall size (E. elymoides), and earlier emergence, longer roots, higher root mass ratio, and more root tips (P. secunda). Commercial sources had significantly larger seeds than wild populations, a trait that had mixed effects on performance in previous research, and one that may change as wild collections are increased in agronomic conditions. These results suggest that locally-sourced populations are more likely to perform well in invaded areas, providing support for efforts to collect, screen, and increase local sources of seeds to improve restoration success. Implications for PracticeO_LICollecting and increasing local seeds requires more time and effort than purchasing commercially-available seeds, but if these sources have a greater chance at surviving in restoration sites, this effort is warranted C_LIO_LIIn our study, remnant local populations possessed more potentially adaptive traits than commercially-available alternatives, indicating they may be superior sources for the restoration of disturbed sites in their local regions C_LIO_LIScreening multiple seed sources for potentially adaptive seed and seedling traits can be a relatively quick and effective way to select the most promising seeds for increase C_LI

ecology↗