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Lee, R. A.

Publications and source records attributed to Lee, R. A..

2 recordsLinked to original sources

An shRNA screen in primary human beta cells identifies the serotonin 1F receptor as a negative regulator of survival during transplant

Islet transplantation can cure type 1 diabetes, but peri-transplant beta cell death limits this procedure to those with low insulin requirements. Improving human beta cell survival or proliferation may make islet transplantation a possibility for more type 1 patients. To identify novel regulators of beta cell survival and proliferation, we conducted a pooled small hairpin RNA (shRNA) screen in primary human beta cells transplanted into immunocompromised mice. shRNAs targeting several cyclin dependent kinase inhibitors were enriched after transplant. Here, we focused on the Gi/o-coupled GPCR, serotonin 1F receptor (HTR1F, 5-HT1F) which our screen identified as a negative regulator of beta cell numbers after transplant. In vitro, 5-HT1F knockdown induced human beta cell proliferation but only when combined with harmine and exendin-4. In vivo, knockdown of 5-HT1F reduced beta cell death during transplant. To demonstrate the feasibility of targeting 5-HT1F in islet transplant, we identified and validated a small molecule 5-HT1F antagonist. This antagonist increased glucose stimulated insulin secretion from primary human islets and cAMP accumulation in primary human beta cells. Finally, the 5-HT1F antagonist improved glycemia in marginal mass, human islet transplants into immunocompromised mice. We identify 5-HT1F as a novel druggable target to improve human beta cell survival in the setting of islet transplantation. One Sentence SummarySerotonin 1F receptor (5-HT1F) negatively regulates insulin secretion and beta cell survival during transplant.

cell biology↗

Assessment of the Clinical Utility of Plasma Metagenomic Next-Generation Sequencing in a Pediatric Hospital Population

BackgroundMetagenomic next-generation sequencing (mNGS) of plasma cell-free DNA (cfDNA) is commercially available, but its role in the workup of infectious diseases is unclear. MethodsTo understand the clinical utility of plasma mNGS, we retrospectively reviewed patients tested at a pediatric institution over 2 years to evaluate the clinical relevance of the organism(s) identified and impact on antimicrobial management. We also investigated the effect of pre-test antimicrobials and interpretation of molecules of microbial cfDNA per microliter (MPM) plasma. Results29/59 (49%) mNGS tests detected organism(s), and 28/51 (55%) organisms detected were clinically relevant. Median MPM of clinically relevant organisms was 1533 versus 221 for irrelevant organisms (p=0.01). mNGS test sensitivity and specificity were 53% and 79%, respectively, with a positive predictive value (PPV) of 72% and negative predictive value (NPV) of 50%. 14% of tests impacted clinical management by changing antimicrobial therapy. Immunocompromised status was the only patient characteristic that trended towards a significant clinical impact (p=0.056). No patients with culture-negative endocarditis had organisms identified by mNGS. There were no significant differences in antimicrobial pre-test duration between tests with clinically relevant organism(s) versus those that returned negative, nor was the MPM different between pre-treated and un-treated organisms, suggesting that 10 days of antimicrobial therapy as observed in this cohort did not sterilize testing; however, no pre-treated organisms identified resulted in a new diagnosis impacting clinical management ConclusionsPlasma mNGS demonstrated higher utility for immunocompromised patients, but given the low PPV and NPV, cautious interpretation and Infectious Diseases consultation are prudent. SummaryWe evaluate the test performance characteristics and clinical utility of plasma metagenomic next-generation sequencing in a pediatric hospital cohort and demonstrate sensitivity and specificity of 53% and 79%, with 14% of tests impacting antimicrobial management.

microbiology↗