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Laruson, A. J.

Publications and source records attributed to Laruson, A. J..

2 recordsLinked to original sources

Seeing the Forest for the trees: Assessing genetic offset predictions with Gradient Forest

Gradient Forest (GF) is increasingly being used to forecast climate change impacts, but remains mostly untested for this purpose. We explore its robustness to assumption violations, and relationship to measures of fitness, using SLiM simulations with explicit genome architecture and a spatial metapopulation. We evaluate measures of GF offset in: (1) a neutral model with no environmental adaptation; (2) a monogenic "population genetic" model with a single environmentally adapted locus; and (3) a polygenic "quantitative genetic" model with two adaptive traits, each adapting to a different environment. Although we found GF Offset to be broadly correlated with fitness offsets under both single locus and polygenic architectures. It could also be confounded by neutral demography, genomic architecture, and the nature of the adaptive environment. GF Offset is a promising tool, but it is important to understand its limitations and underlying assumptions, especially when used in the context of forecasting maladaptation.

evolutionary biology↗

Gene expression across tissues, sex, and life stages in the sea urchin Tripneustes gratilla

The pan-tropical sea urchin Tripneustes gratilla is an ecologically and economically important shallow water algal grazer. The aquaculture of T. gratilla has spurred growing interest in the population biology of the species, and by extension the generation of more molecular resources. To this purpose, de novo transcriptomes of T. gratilla were generated for two adults, a male and a female, as well as for a cohort of approximately 1,000 plutei larvae. Gene expression profiles of three adult tissue samples were quantified and compared. These samples were of gonadal tissue, the neural ring, and pooled tube feet and pedicellariae. Levels of shared and different gene expression between sexes, as well as across functional categories of interest, including the immune system, toxins, genes involved in fertilization, and sensory genes are highlighted. Differences in expression of Sex determining Region Y-related High Mobility Group box groups and general isoform expression between the sexes is observed. Additionally an expansion of the tumor suppressor DMBT1 was observed in T. gratilla when compared to the annotated genome of the sea urchin Strongylocentrotus purpuratus. The draft transcriptome of T. gratilla is presented here in order to facilitate more genomic level analysis of de-novo sea urchin systems.

molecular biology↗