Biology subjects

Larose, C.

Publications and source records attributed to Larose, C..

3 recordsLinked to original sources

bioRxiv2018

Fundamental and realized feeding niche breadths of sexual and asexual stick-insects

The factors contributing to the maintenance of sex over asexuality in natural populations remain largely unknown. Ecological divergences between lineages with different reproductive modes could help to maintain reproductive polymorphisms, at least transiently, but there is little empirical information on the consequences of asexuality for the evolution of ecological niches. Here, we investigated how niche breadths evolve following transitions from sexual reproduction to asexuality. We estimated and compared the realized feeding niche breadths of five independently derived asexual Timema stick insect species and their sexual relatives. We found that asexual species had a systematically narrower realized niche than sexual species. To investigate how the narrower realized niches of asexual versus sexual species come about, we quantified the breadth of their fundamental niches but found no systematic differences between reproductive modes. The narrow realized niches found in asexuals are therefore likely a consequence of biotic interactions that constrain realized niche size in asexuals more strongly than in sexuals. Interestingly, the fundamental niche was broader in the oldest asexual species compared to its sexual relative. This broad ecological tolerance may help explain how this species has persisted over more than a million years in absence of sex.

ecology↗

bioRxiv2018

Evolutionary dynamics of specialization in herbivorous stick insects

Understanding the evolutionary dynamics underlying herbivorous insect mega-diversity requires investigating the ability of insects to shift and adapt to different host plants. Feeding experiments with nine related stick insect species revealed that insects retain the ability to use ancestral host plants after shifting to novel hosts, with host plant shifts generating fundamental feeding niche expansions. These expansions were not accompanied by expansions of the realized feeding niches however, as species on novel hosts are generally ecologically specialized. For shifts from angiosperm to chemically challenging conifer hosts, generalist fundamental feeding niches even evolved jointly with strong host plant specialization, indicating that host plant specialization is more likely driven by species interactions than by constraints imposed by plant chemistry. By coupling analyses of plant chemical compounds, fundamental and ecological feeding niches in multiple insect species, we provide novel insights into the evolutionary dynamics of host range expansion and contraction in herbivorous insects.

evolutionary biology↗

bioRxiv2018

Evaluating metabarcoding to analyse diet composition of species foraging in anthropogenic landscapes using Ion Torrent and Illumina sequencing

DNA metabarcoding of faecal samples is being successfully used to study the foraging niche of species. We assessed the ability of two benchtop high-throughput sequencing (HTS) platforms, to identify a large taxonomic array of food items from domestic cats Felis silvestris catus, including prey and human-related food taxa (pet food and leftovers leaving undetectable solid remains in faeces). Scats from a captive feeding trial (n=41) and from free-ranging individuals (n=326) were collected and analysed using a cytb mini-barcode in independent PCR duplicates on the Ion PGM and the MiSeq platforms. Outputs from MiSeq were more sensitive and reproducible than those from Ion PGM due to a higher sequencing depth and sequence quality on MiSeq. DNA from intact prey taxa was detected more often (82% of the expected occurrences) than DNA from pet food (54%) and raw fish and meat (31%). We assumed that this variability was linked to different degree of DNA degradation: The Ion PGM detected significantly less human-linked food, birds, field voles, murids and shrews in the field-collected samples than the MiSeq platform. Pooling the replicates from both platforms and filtering the data allowed identification of at least one food item in 87.4% of the field-collected samples. Our DNA metabarcoding approach identified 29 prey taxa, of which 25 to species level (90% of items) including 9 rodents, 3 insectivores, 12 birds and 1 reptile and 33 human-related food taxa of which 23 were identified to genus level (75% of items). Our results demonstrate that using HTS platforms such as MiSeq, which provide reads of sufficiently high quantity and quality, with sufficient numbers of technical replicates, is a robust and non-invasive approach for further dietary studies on animals foraging on a wide range of food items in anthropogenic landscapes.

molecular biology↗