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Lanciano, T.

Publications and source records attributed to Lanciano, T..

2 recordsLinked to original sources

Mesoscopic patterns of functional connectivity alterations in autism by contrast subgraphs

Despite the breakthrough achievements in understanding structural and functional connectivity alterations that underlie autism spectrum disorder (ASD), the exact nature and type of such alterations are not yet clear due to conflicting reports of hyper-connectivity, hypo-connectivity, and -in some cases- combinations of both. In this work, we approach the debate about hyper- vs hypoconnectivity in ASD using a novel network comparison technique designed to capture mesoscopic-scale differential structures. In particular, we build on recent algorithmic advances in the sparsification of functional connectivity matrices, in the extraction of contrast subgraphs, and in the computation of statistically significant maximal frequent itemsets, and develop a method to identify mesoscale structural subgraphs that are maximally dense and different in terms of connectivity levels between the different sets of networks. We apply our method to analyse brain networks of typically developed individuals and ASD patients across different developmental phases and find a set of altered cortical-subcortical circuits between healthy subjects and patients affected by ASD. Specifically, our analysis highlights in ASD patients a significantly larger number of functional connections among regions of the occipital cortex and between the left precuneus and the superior parietal gyrus. At the same time, reduced connectivity characterised the superior frontal gyrus and the temporal lobe regions. More importantly, we can simultaneously detect regions of the brain that show hyper and hypo-connectivity in ASD in children and adolescents, recapitulating within a single framework multiple previous separate observations.

neuroscience↗

Contrast Subgraphs Allow Comparing Homogeneous and Heterogeneous Networks Derived from Omics Data

Biological networks are often used to describe the relationships between relevant entities, in particular genes and proteins, and are a powerful tool for functional genomics. Many important biological problems can be investigated by comparing biological networks between different conditions, or networks obtained with different techniques. We show that contrast subgraphs, a recently introduced technique to identify the most important structural differences between two networks, provide a versatile tool for comparing gene and protein networks of diverse origin. We show in three concrete examples how contrast subgraphs can provide new insight in functional genomics by extracting the gene/protein modules whose connectivity is most altered between two conditions or experimental techniques.

bioinformatics↗