Biology subjects

Laine, A.-L.

Publications and source records attributed to Laine, A.-L..

17 recordsLinked to original sources

bioRxiv2026

Field Plant Biodiversity and Carbon Farming Shape Leaf Microbiomes

Carbon farming practices are increasingly adopted as part of regenerative agriculture to enhance soil carbon sequestration and improve agricultural sustainability. However, their effects on the phyllosphere microbiome, and how these interact with field biodiversity, remain poorly understood. We investigated how field biodiversity and carbon farming practices (cover crops, all-in mixes, adaptive grazing and ley mixture) influence leaf microbial communities across 19 Finnish farms using ITS and 16S amplicon sequencing. Foliar fungal - but not bacterial - diversity increased with plant species richness. Carbon farming altered both fungal and bacterial community composition, but only fungal community was positively associated with disease load. Network analysis identified three candidate keystone taxa: Alternaria sp. (FASV 34) and Sporobolomyces roseus (FASV 2070), which were mutually exclusive, and Methylobacterium sp. (BASV 75), which co-occurred with FASV 2070. Together, these findings demonstrate that different carbon farming practices shape distinct leaf microbiomes cover crop systems tending to favor potential fungal pathogens, whereas ley mixture and adaptive grazing strategies promote microbial taxa associated with healthier phyllosphere communities. Our study underscores the importance of understanding the complex microbial interactions within leaf ecosystems to inform sustainable agricultural practices.

ecology↗

bioRxiv2026

Habitat context alters the pace of climate-driven community warming across terrestrial and freshwater ecosystems

As global temperatures rise, ecological communities are increasingly dominated by warm-affiliated species, a process known as community warming or thermophilisation. Yet, why different taxa exhibit different rates of community warming remains unclear. Habitat composition and structure are likely drivers of this variation, as the ecological consequences of warming are filtered by local environmental conditions. Using over 40 years of monitoring data spanning terrestrial (birds, insects, plants) and freshwater (phytoplankton) communities, we show that habitat structure determines how strongly communities track warming. Forest cover systematically slows thermophilisation by reducing communities sensitivity to temperature change, whereas habitat heterogeneity has weak and variable effects that differ among ecosystems. Together, these results demonstrate that uneven thermophilisation arises from habitat-mediated differences in how communities respond to a shared climatic signal. Incorporating these effects is essential for improving predictions of biodiversity change under ongoing climate warming.

ecology↗

bioRxiv2026

Biotic modulators of global change effects on plant communities

Understanding and predicting future plant biodiversity and productivity is critical for prioritizing global change mitigation, conservation, and restoration efforts. One major challenge is that we know remarkably little of how interspecific interactions may modulate the effects of global change factors on diversity and productivity. Here, we develop and test a synthetic conceptual framework about how different biotic modulators (herbivory, plant-plant interactions, pathogens, mycorrhiza) can either amplify or mitigate the effects of global change drivers (nutrient and CO2 enrichment, changes in rainfall and temperature) on plant community biomass and diversity. We report that herbivores mitigated both biomass increment and diversity decline caused by different global change drivers, while plant competition did not significantly alter global change impacts due to mixed effects (both amplification and mitigation). Pathogens tended to function similarly to herbivores, while mycorrhiza both amplified and mitigated community responses. Our conceptual framework further identifies mechanisms by which species interactions can modify global change effects, provides new testable hypotheses, and identifies research gaps and future research directions. We conclude that plant consumers can be important agents stabilizing plant productivity and safeguarding plant biodiversity in the Anthropocene, while more research is urgently needed to understand the role of other biotic modulators.

ecology↗

bioRxiv2026

Accelerating species loss in southern boreal understories as early warning sign of functional erosion

Biodiversity is changing rapidly worldwide. Although taxonomic and functional diversity are intrinsically linked, biodiversity change can decouple their trajectories, challenging biodiversity assessments that often focus on a taxonomic perspective. As a result, functional consequences of biodiversity change remain elusive. To better understand how taxonomic and functional diversity change are intertwined, we analytically partition functional diversity change. Specifically, using 38 years of boreal forest understorey data across Finland, we explicitly link species turnover to shifts in community functional composition. We show that, while stable in Mid and Northern regions, recent net loss of fast-growing species in Southern Finland has halted a decades-long increase in functional diversity. This slowdown emerges not from the loss of highly functionally unique species, but rather from the cumulative number of species lost, whose low abundances limit their contribution to functional diversity. Our approach uncovers mechanisms underlying the decoupling of taxonomic and functional diversity, illustrating how functional diversity can persist despite species loss, while also indicating a growing risk of functional erosion. Taken together, these findings underscore the importance and utility of integrating taxonomic and functional dimensions to better anticipate ecological consequences of biodiversity change.

ecology↗

bioRxiv2025

Human emotional odours influence horses' behaviour and physiology

Olfaction is the most widespread sensory modality animals use to communicate, yet much remains to be discovered about its role. While most studies focused on intraspecific interactions and reproduction, new evidence suggests chemosignals may influence interspecific interactions and emotional communication. This study explores this possibility, investigating olfactory signals in emotional contagion from the example of human-horse interactions. Cotton pads carrying human odours from fear and joy contexts, or unused pads (control odour) were applied to 43 horses nostrils during fear tests (suddenness and novelty tests) and human interaction tests (grooming and approach tests). Principal component analysis showed that overall, when exposed to fear-related human odours, horses exhibited significantly heightened fear responses and reduced interaction with humans compared to joy-related and control odours. More precisely, when exposed to fear-related odours, horses touched the human less in the human approach test, gazed more at the novel object, and were more startled (startle intensity and maximum heart rate) by a sudden event. These results highlight the significance of chemosignals in interspecific interactions and provides insights into questions about the impact of domestication on emotional communication.

animal behavior and cognition↗

bioRxiv2025

Who is who in necromass formation and stabilization in soil? Unraveling the role of fungi and bacteria as complementary players of biogeochemical functioning

Multiple global change drivers have caused a large carbon (C) debt in our soils. To remedy this debt, understanding the role of microorganisms in soil C cycling is crucial to tackle the C soil loss. Microbial carbon use efficiency (CUE) is a parameter that captures the formation of microbially-derived soil organic matter (SOM). While it is known that biotic and abiotic drivers influence CUE, it remains unclear how distinct microbial communities and abiotic conditions influence the formation of microbially-derived SOC and its persistence in soils. Here, we combined the inoculation of distinct communities (a biotic factor) grown at different moisture levels (an abiotic factor) to manipulate the formation of microbial necromass in model soil. In a follow-up experiment, we then evaluated the persistence of this previously formed microbially-derived C to decomposition. While we show that necromass formation reflects the microbial community composition, the SOC formed within the most complex community of bacteria and fungi seems to be more resistant to decomposition compared to the SOC formed within the simpler communities (bacteria and fungi simple community, bacteria only and fungi only communities). Moreover, fungal necromass proved to be more thermally-stable than bacterial necromass, if this necromass is formed under the presence of bacteria. Our findings reveal that although abiotic factors can influence microbial physiology, the biological origin of microbially-derived C and the co-occurrence of fungal and bacterial growth were the stronger drivers explaining SOM persistence in these soils, suggesting the importance of microbial succession in SOC stabilization.

ecology↗

bioRxiv2025

Affiliative behaviours regulate allostasis development and shape biobehavioural trajectories in horse

Social interactions shape both physiological and behavioural development of offspring and poor care/early caregiver loss are known to promote negative outcomes in adulthood in both animals and humans. How affiliative behaviours impact future development of offspring remains unknown. Here, we used Equus caballus (domestic horse) as a model to investigate this question. By coupling magnetic resonance imaging, longitudinal biobehavioural assessment and advanced multivariate statistical modelling we found that maternal presence during childhood promotes maturation of brain territories involved in both social behaviour (anterior cingulate, retrosplenial cortex) and physiological regulation (hypothalamus, amygdala). Additionally, we found that offsprings benefiting from prolonged maternal presence showed higher default mode network (DMN) connectivity, improved social competences, more efficient feeding behaviours, and metabolic profiles. The present study underscores the salient role of social interactions for the development of allostatic regulation in offspring.

neuroscience↗

bioRxiv2024

The potential of undersown species identity vs. diversity to manage disease in crops

O_LIIn the absence of chemical control with its negative side effects, fungal pathogens can cause large yield losses, requiring us to develop agroecosystems that are inherently disease resistant. Grassland biodiversity experiments often find plant species diversity to reduce pathogen pressure, but whether incorporating high biodiversity levels in agricultural fields have similar effects remains largely unknown. C_LIO_LIWe tested if undersown plant species diversity could reduce barley disease, and whether the effect was mediated through above- or belowground mechanisms, by combining an agricultural field trial with a soil transplant experiment. C_LIO_LIAs predicted, barley disease decreased in the presence of undersown plants. Undersown species richness had no effect, but their abundance led to early season disease reduction. Aboveground mechanisms underpinned this disease reduction. Barley yield slightly decreased with increasing undersown species richness, and undersown species varied in their impact on yield. C_LIO_LIWe identified two undersown species with similar functional traits that contributed most to disease reduction and had the potential to increase barley yield. Furthermore, our results indicate that aboveground mechanisms caused this. We show that agroecosystem functioning can be improved without trade-offs on yield by targeted selection of undersown species. C_LI

ecology↗

bioRxiv2023

Inferring ecological selection from multidimensional community trait distributions along environmental gradients

Understanding the drivers of community assembly is critical for predicting the future of biodiversity and ecosystem services. While trait-based frameworks are often used to this end, correlations among traits and the assumption of unimodal trait-abundance distributions confound detection of the underlying processes. To overcome these caveats, here we quantify multidimensional trait distributions of communities (community trait niches), which we use to identify ecological selection types shaping communities along environmental gradients. We find that directional, stabilizing, and divergent selection all modify community trait niches in over 3600 boreal forest understory plant communities, and selection on a particular trait may change from one type to another over time. Our results provide novel and rare empirical evidence from a natural system for divergent selection. The results also show that while higher trait diversity (measured as trait niche volume) is generally associated with higher species richness, high resource availability may enable tighter niche packing. Jointly our approach provides a framework for identifying key traits under selection and facilitates the detection of processes underlying community dynamics.

ecology↗

bioRxiv2022

Microbial diversity ensures the stability of carbon cycling processes under increasing temperature in model soils

Biodiversity loss and climate change are two of the most alarming threats to ecosystem functioning and stability. These factors are, however, typically investigated separately, overlooking potential interactions between species extinctions and climate change on ecosystems. Here, we evaluated how different temperature regimes impact the relationship between microbial diversity and ecosystem functioning, in terms of temperature sensitivity of carbon (C) cycling functions. We hypothesized that more diverse soil communities promote the stability of C cycling functions under both temperature regimes. We did not observe a ubiquitous response of all C-cycling processes to temperature increases within the distinct community diversities. While growth was stable with increasing temperatures among the diversity levels, respiration rates increased more strongly at low diversity levels than high diversity levels at higher temperatures. Carbon use efficiency, which integrates both growth and respiration, tended to decrease with temperature at lower levels of diversity. Jointly, these results demonstrate the importance of belowground soil community diversity for maintaining C-cycling thermal response under changing climate.

microbiology↗

bioRxiv2022

Identifying and separating the processes underlying boreal forest understory community assembly

Joint species distribution models (JSDMs) are an important conservation tool for predicting ecosystem diversity and function under global change. The growing complexity of modern JSDMs necessitates careful model selection tailored to the challenges of community prediction under novel conditions (i.e., transferable models). Common approaches to evaluate the performance of JSDMs for community-level prediction are based on individual species predictions that do not account for the species correlation structures inherent in JSDMs. Here, we formalize a Bayesian model selection approach that accounts for species correlation structures and apply it to compare the community-level predictive performance of alternative JSDMs across broad environmental gradients emulating transferable applications. We connect the evaluation of JSDM predictions to Bayesian model selection theory under which the log score is the preferred performance measure for probabilistic prediction. We define the joint log score for community-level prediction and distinguish it from more commonly applied JSDM evaluation metrics. We then apply this community log score to evaluate predictions of 1,918 out-of-sample boreal forest understory communities spanning 39 species generated using a novel JSDM framework that supports alternative species correlation structures: independent, compositional dependence, and residual dependence. The best performing JSDM included all observed environmental variables and multinomial species correlations reflecting compositional dependence within modeled community data. The addition of flexible residual species correlations improved model predictions only within JSDMs applying a reduced set of environmental variables highlighting potential confounding between unobserved environmental conditions and residual species dependence. The best performing JSDM was consistent across successional and bio-climatic gradients regardless of whether interest was in species- or community-level prediction. Our study demonstrates the utility of the community log score to quantify differences in the predictive performance of complex JSDMs and highlights the importance of accounting for species dependence when interest is in community composition under novel conditions.

ecology↗

bioRxiv2022

Effects of abiotic environment on invertebrate herbivory depend on plant community context in a montane grassland

Invertebrate herbivores are important and diverse, and their abundance and impacts are expected to undergo unprecedented shifts under climate change. Yet, past studies of invertebrate herbivory have documented a wide variety of responses to changing temperature, making it challenging to predict the direction and magnitude of these shifts. One explanation for these idiosyncratic responses is that changing environmental conditions may drive concurrent changes in plant communities and herbivore traits. Thus, the impacts of changing temperature on herbivory might depend on how temperature combines and interacts with characteristics of plant communities and the herbivores that occupy them. Here, we test this hypothesis by surveying invertebrate herbivory in 220, 0.5 meter-diameter herbaceous plant communities along a 1101-meter elevational gradient. Our results suggest that increasing temperature can drive community-level herbivory via at least three overlapping mechanisms: increasing temperature directly reduced herbivory, indirectly affected herbivory by reducing phylogenetic diversity of the plant community, and indirectly affected herbivory by altering the effects of functional and phylogenetic diversity on herbivory. Consequently, increasing functional diversity of plant communities had a negative effect on herbivory, but only in colder environments while a positive effect of increasing phylogenetic diversity was observed in warmer environments. Moreover, accounting for differences among herbivore feeding guilds considerably improved model fit, because different herbivore feeding guilds varied in their response to temperature and plant community composition. Together, these results highlight the importance of considering both plant and herbivore community context in order to predict how climate change will alter invertebrate herbivory.

ecology↗

bioRxiv2021

The Evolutionary Dynamics of Hyperparasites

Evolutionary theory has typically focused on pairwise interactions, such as those between hosts and parasites, with relatively little work on more complex interactions including hyperparasites: parasites of parasites. Hyperparasites are common in nature, with the chestnut blight fungus virus CHV-1 a well-known natural example, but also notably include the phages of important human bacterial diseases. Theory on hyperparasitism has mostly focused on their impact on the evolution of virulence of their parasite host and relatively little is known about evolutionary trajectories of hyperparasites themselves. Our general modeling framework highlights the central role the that ability of a hyperparasite to be transmitted with its parasite plays in their evolution. Hyperparasites which transmit with their parasite hosts (hitchhike) will be selected for lower virulence, trending towards hypermutualism or hypercommensalism and select against causing a reduction in parasite virulence (hypovirulence). We examine the impact on the evolution of hyperparasite systems a of a wide range of host and parasite traits showing, for example, that high parasite virulence selects for higher hyperparasite virulence feeding back into selection for hypovirulence in the parasite. Our results have implications for hyperparasite research, both as biocontrol agents and for understanding of how hyperparasites shape community ecology and evolution.

evolutionary biology↗

bioRxiv2021

Genotype-specific benefits and risks of a mutualist association during natural epidemics

O_LIWhile pathogenic and mutualistic microbes are ubiquitous across ecosystems and often co-occur within hosts, how they interact to determine patterns of disease in genetically diverse wild populations is unknown. C_LIO_LITo test whether microbial mutualists provide protection against pathogens, and whether this varies among host genotypes, we conducted a field experiment in three naturally-occurring epidemics of a fungal pathogen, Podosphaera plantaginis, infecting a host plant, Plantago lanceolata, in the [A]land Islands, Finland. In each population, we collected epidemiological data on experimental plants from six allopatric populations that had been inoculated with a mixture of mutualistic arbuscular mycorrhizal fungi or a non-mycorrhizal control. C_LIO_LIInoculation with arbuscular mycorrhizal fungi increased growth in plants from every population, but also increased host infection rate. Mycorrhizal effects on disease severity varied among host genotypes and strengthened over time during the epidemic. Host genotypes that were more susceptible to the pathogen received stronger protective effects from inoculation. C_LIO_LIOur results show that arbuscular mycorrhizal fungi introduce both benefits and risks to host plants, and shift patterns of infection in host populations under pathogen attack. Understanding how mutualists alter host susceptibility to disease will be important for predicting infection outcomes in ecological communities and in agriculture. C_LI Plain Language SummaryBeneficial, mycorrhizal fungi in roots help plants grow and may protect them from diseases caused by pathogenic microbes. This study shows that arbuscular mycorrhizal fungi can influence patterns of plant disease during pathogen outbreaks in a natural landscape.

ecology↗

bioRxiv2021

Environmental drivers of disease depend on host community context

Predicting disease risk in an era of unprecedented biodiversity and climate change is more challenging than ever, largely because when and where hosts are at greatest risk of becoming infected depends on complex relationships between hosts, parasites, and the environment. Theory predicts that host species characterized by fast-paced life-history strategies are more susceptible to infection and contribute more to transmission than their slow-paced counterparts. Hence, disease risk should increase as host community structure becomes increasingly dominated by fast-paced hosts. Theory also suggests that environmental gradients can alter disease risk, both directly, due to abiotic constraints on parasite replication and growth, and indirectly, by changing host community structure. What is more poorly understood, however, is whether environmental gradients can also alter the effect of host community structure on disease risk. We addressed these questions using a detailed survey of host communities and infection severity along a 1100m elevational gradient in southeastern Switzerland. Consistent with prior studies, increasing elevation directly reduced infection severity, which we attribute to abiotic constraints, and indirectly reduced infection severity via changes in host richness, which we attribute to encounter reduction. Communities dominated by fast pace-of-life hosts also experienced more disease. Finally, although elevation did not directly influence host community pace-of-life, the relationship between pace-of-life and disease was sensitive to elevation: increasing elevation weakened the relationship between host community pace-of-life and infection severity. This result provides the first field evidence, to our knowledge, that an environmental gradient can alter the effect of host community structure on infection severity.

ecology↗

bioRxiv2020

Biodiversity loss underlies the dilution effect of biodiversity

The dilution effect predicts increasing biodiversity to reduce the risk of infection, but the generality of this effect remains unresolved. Because biodiversity loss generates predictable changes in host community competence, we hypothesized that biodiversity loss might drive the dilution effect. We tested this hypothesis by reanalyzing four previously published meta-analyses that came to contradictory conclusions regarding generality of the dilution effect. In the context of biodiversity loss, our analyses revealed a unifying pattern: dilution effects were inconsistently observed for natural biodiversity gradients, but were commonly observed for biodiversity gradients generated by disturbances causing losses of native biodiversity. Incorporating biodiversity loss into tests of generality of the dilution effect further indicated that scale-dependency may strengthen the dilution effect only when biodiversity gradients are driven by biodiversity loss. Together, these results help to resolve one of the most contentious issues in disease ecology: the generality of the dilution effect.

ecology↗

bioRxiv2020

Facilitative priority effects drive parasite assembly under coinfection

Host individuals are often coinfected with diverse parasite assemblages, resulting in complex interactions among parasites within hosts. Within hosts, priority effects occur when the infection sequence alters the outcome of interactions among parasites. Yet, the role of host immunity in this process remains poorly understood. We hypothesized that the host response to first infection could generate priority effects among parasites, altering the assembly of later arriving strains during epidemics. We tested this by infecting sentinel host genotypes of Plantago lanceolata with strains of the fungal parasite, Podosphaera plantaginis, and measuring susceptibility to subsequent infection during experimental and natural epidemics. In these experiments, prior infection by one strain often increased susceptibility to other strains, and these facilitative priority effects altered the structure of parasite assemblages, but this effect depended on host genotype, host population, and parasite genotype. Thus, host genotype, spatial structure, and priority effects among strains all independently altered parasite assembly. Then, using a fine-scale survey and sampling of infections on wild hosts in several populations, we identified a signal of facilitative priority effects, which altered parasite assembly during natural epidemics. Together, these results provide evidence that within host priority effects by early arriving strains can drive parasite assembly, with implications for how strain diversity is spatially and temporally distributed during epidemics.

ecology↗