Biology subjects

LaGrow, T.

Publications and source records attributed to LaGrow, T..

3 recordsLinked to original sources

bioRxiv2026

Fidelity of Spatiotemporal Patterns of Brain Activity Across Sampling Rate, Scan Duration, and Frequency Content

Intrinsic brain activity is characterized by large-scale spatiotemporal patterns that underpin functional connectivity and cognition. Quasi-periodic patterns (QPPs) and complex principal component analysis (cPCA) have emerged as reproducible methods for capturing spatiotem-poral network interactions in resting-state functional magnetic resonance imaging (rs-fMRI). However, these methods remain sensitive to methodological factors such as scan duration, repetition time (TR), and frequency band selection. This study systematically evaluates how these parameters influence the stability and reliability of QPP- and cPCA-derived functional connectivity patterns across multiple datasets. Using five independent rs-fMRI datasets, we evaluate the impact of scan length on pattern reliability, explore the effects of TR on spatiotemporal patterns, and compare the sensitivity of different frequency bands (Slow-5, Slow-4, infraslow) in capturing network dynamics. Our findings reveal that while both QPPs and cPCA detect intrinsic network activity, their reliability varies with acquisition parameters. QPPs exhibit greater stability in shorter scans, making them suitable for individual-level analyses, whereas cPCA provides a broader representation of phase-coherent fluctuations but shows greater between-subject variability and benefits more from longer, group-level acquisi-tions. Additionally, frequency band selection significantly influences the temporal structure of extracted patterns: in our analyses, Slow-5 (0.01-0.027 Hz) tended to emphasize more recurrent, synchronized network configurations, whereas Slow-4 (0.027-0.073 Hz) more often revealed transitions between connectivity states. These results provide critical insights into optimizing methodological choices for dynamic functional connectivity analysis, enhancing the interpretability of spatiotemporal patterns in both basic and clinical neuroimaging research.

neuroscience↗

bioRxiv2025

Spatiotemporal Network Dynamics Reveal Alzheimer's Disease Progression

Alzheimers disease (AD) is characterized by progressive disruptions in large-scale brain networks that precede cognitive decline, yet conventional functional connectivity analyses often fail to detect disruptions in coordination among large-scale brain networks that may be critical for early detection. This study leverages quasi periodic patterns (QPPs) and complex principal component analysis (cPCA) to characterize spatiotemporal network alterations across longitudinally stable (normal cognitive, mild cognitive impairment, dementia of Alzheimers type) and transitioning (normal cognitive to mild cognitive impairment, mild cognitive impairment to dementia of Alzheimers type) cohorts from the Alzheimers Disease Neuroimaging Initiative using resting state fMRI. QPPs were used to derive recurrent spatiotemporal templates and network integrity measures at the intrinsic connectivity network level, while cPCA decomposed Hilbert transformed time series into complex valued patterns that capture amplitude and phase relationships. Nonparametric group comparisons revealed a structured trajectory in which limbic, subcortical, and higher cognition networks, including triple network components, are affected early, followed by progressive disruption in visual, cerebellar, sensorimotor, and additional triple network systems. Transitioning cohorts showed many of these alterations before formal diagnostic conversion, indicating that spatiotemporal signatures carry preclinical information. QPP based metrics were particularly sensitive to limbic and subcortical degradation, whereas cPCA emphasized changes in higher order, visual, and cerebellar patterns, revealing complementary aspects of the same underlying pathology. These findings extend prior QPP only work and highlight the utility of combining QPP and cPCA based measures as a dynamic, network-level biomarker framework for AD progression. with potential applications in early detection, characterizing disease trajectories, and treatment monitoring.

neuroscience↗

bioRxiv2024

Evidence for white matter intrinsic connectivity networks at rest and during a task: a large-scale study and templates

Understanding white matter (WM) functional connectivity is crucial for unraveling brain function and dysfunction. In this study, we present a novel WM intrinsic connectivity network (ICN) template derived from over 100,000 fMRI scans, identifying 97 robust WM ICNs using spatially constrained independent component analysis (scICA). This WM template, combined with a previously identified gray matter (GM) ICN template from the same dataset, was applied to analyze a resting-state fMRI (rs-fMRI) dataset from the Bipolar-Schizophrenia Network on Intermediate Phenotypes 2 (BSNIP2; 590 subjects) and a task-based fMRI dataset from the MIND Clinical Imaging Consortium (MCIC; 75 subjects). Our analysis highlights distinct spatial maps for WM and GM ICNs, with WM ICNs showing higher frequency profiles. Modular structure within WM ICNs and interactions between WM and GM modules were identified. Task-based fMRI revealed event-related BOLD signals in WM ICNs, particularly within the corticospinal tract, lateralized to finger movement. Notable differences in static functional network connectivity (sFNC) matrices were observed between controls (HC) and schizophrenia (SZ) subjects in both WM and GM networks. This open-source WM NeuroMark template and automated pipeline offer a powerful tool for advancing WM connectivity research across diverse datasets.

neuroscience↗