pyALRA: python implementation of low-rank zero-preserving approximation of single cell RNA-seq
SummaryWe present pyALRA, an efficient python implementation of the ALRA R package conceived to impute drop out values using a low-rank zero-preserving approximation for single cell RNA-seq. This re-implementation achieves similar performance prediction using corresponding python methods and allows both speed and RAM consumption improvements. AvailabilitypyALRA is released as an open-source software under the MIT license. The source code is available on GitHub at https://github.com/alexandrelanau/pyALRA.
bioinformatics↗