bioRxiv Science⌕ Search

Biology subjects

Kun, Z.

Publications and source records attributed to Kun, Z..

2 recordsLinked to original sources

Marine biofilms: cyanobacteria factories for the global oceans

Marine biofilms were newly revealed as a giant microbial diversity pool for global oceans. However, the cyanobacterial diversity in marine biofilms within the upper seawater column and its ecological and evolutionary implications remains undetermined. Here, we reconstructed a full picture of modern marine cyanobacteria habitats by re-analysing 9.3 terabyte metagenomic datasets and 2648 metagenome-assembled genomes (MAGs). The abundance of cyanobacteria lineages exclusively detected in marine biofilms were up to 9-fold higher than those in seawater at similar sample size. Analyses revealed that cyanobacteria in marine biofilms are specialists with strong geographical and environmental constraints on their genome and functional adaption, which in stark contrast to the generalistic features of seawater-derived cyanobacteria. Molecular dating suggests the important diversifications in biofilm-forming cyanobacteria appear to coincide with the Great Oxidation Event (GOE), "boring billion" middle Proterozoic, and the Neoproterozoic Oxidation Event (NOE). These new insights suggest that marine biofilms are large and important cyanobacterial factories for the global oceans. ImportanceCyanobacteria, highly diverse microbial organisms, play a crucial role in Earths oxygenation and biogeochemical cycling. However, their connection to these processes remains unclear, partly due to incomplete surveys of oceanic niches. Our study uncovered significant cyanobacterial diversity in marine biofilms, showing distinct niche differentiation compared to seawater counterparts. These patterns reflect three key stages of marine cyanobacterial diversification, coinciding with major geological events in Earths history. Thus, surface-associated biomass within oceanic niches emerges as a pivotal factor in Earths evolution.

microbiology↗

European Primary Forest Database (EPFD) v2.0

Primary forests are scarce in Europe and continue to disappear at an alarming rate. Despite these losses, we know little about where such forests still occur. Here, we present an updated geodatabase and map of Europes known primary forests. Our geodatabase harmonizes 48 different datasets of primary forests, and contains 18,411 individual patches (41.1 Mha) spread across 33 countries. When available, we provide information on each patch (name, location, naturalness, extent and dominant tree species) and the surrounding landscape (biogeographical regions, protection status, potential natural vegetation, current forest extent). To assess the robustness of our geodatabase, we checked each patch for forest disturbance events using Landsat satellite-image time series (1985-2018). We estimate that 94% of the patches in our database did not experience significant disturbances that would alter their primary forest status in the last 30 year. Our database is the most comprehensive dataset on primary forests in Europe, and will be useful for biogeographic and ecological studies, and conservation planning to safeguard these unique forests.

ecology↗