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Kumpost, V.

Publications and source records attributed to Kumpost, V..

3 recordsLinked to original sources

Synchronization of oscillatory growth prepares fungal hyphae for fusion

Communication is crucial for organismic interactions, from bacteria, to fungi, to humans. Humans may use the visual sense to monitor the environment before starting acoustic interactions. In comparison, fungi lack a visual system, instead, hyphae use a cell-to-cell dialogue based on secreted signaling molecules to orchestrate cell fusion and establish hyphal networks. Hyphae alternate roles as signal-sender and signal-receiver, as can be visualized via the putative signaling protein, Soft, which is recruited in an oscillatory manner to the respective cytoplasmic membrane of interacting hyphae. Here, we show that signal oscillations already occur in single hyphae of Arthrobotrys flagrans in the absence of a potential fusion partner. They occurred in the same phase as growth oscillations. Once two fusion partners came into each others vicinity, their oscillation frequencies slowed down (entrainment phase) and transit into anti-phasic synchronization of the two cells oscillations with frequencies of 130 +/-20 sec. Single-cell oscillations, transient entrainment, and anti-phasic oscillations were reproduced by a mathematical model where nearby hyphae can absorb and secrete a limited molecular signaling component into a shared extra-cellular space. We show that intracellular Ca2+ concentrations oscillate in two approaching hyphae, and depletion of Ca2+ in the surrounding affected vesicle-driven extension of the hyphal tip, abolished single-cell molecular oscillations and the anti-phasic synchronization of two hyphae. Our results suggest that single hyphae engage in a "monologue" that may be used for exploration of the environment and can dynamically shift their extra-cellular signaling systems into a "dialogue" to initiate hyphal fusion. Significance statementCommunication at the cellular level often relies on chemical signal exchange. One prominent example is the fusion of fungal hyphae to form complex hyphal networks. As opposed to mating-type dependent cell fusion, cell-fusion events described here occur in genetically identical cells. Relying only on one chemical signaling channel raises the question of how communication is initiated. We discovered that individual hyphae constantly perform signal oscillations, comparable to a cellular "monologue" until they meet another hypha with which they then coordinate signal oscillations in a cell-to-cell dialogue. We also show that signal oscillations are mechanistically interlinked with calcium-dependent growth oscillations. Although the signaling molecule(s) has not been identified yet, it is highly likely linked to the hyphal growth machinery.

cell biology↗

Noise facilitates entrainment of a population of uncoupled limit cycle oscillators

Many biological oscillators share two properties: they are subject to stochastic fluctuations (noise) and they must reliably adjust their period to changing environmental conditions (entrainment). While noise seems to distort the ability of single oscillators to entrain, in populations of oscillators noise allows entrainment for a wider range of input amplitudes and periods. Here, we investigate, how this effect depends on the noise intensity and the number of oscillators in the population. We have found that, if a population consists of a sufficient number of oscillators, increasing noise intensity leads to faster entrainment after a phase change of the input signal (jet lag) and increases sensitivity to low-amplitude input signals. SIGNIFICANCELive is characterized by rhythms, such as daily changes in activity or the heartbeat. These rhythms are reflected in molecular oscillations generated at the level of individual cells. These oscillations are inherently noisy, but still cells reliably synchronize to external signals and provide reliable timing for other biological processes. Here, we show how noise can be beneficial to cell populations in terms of synchronization to external signals. Specifically, noise can increase the sensitivity to weak external signals and speed up adjustment to jet-lag-like perturbations.

systems biology↗

A stochastic oscillator model simulates the entrainment of vertebrate cellular clocks by light

The circadian clock is a cellular mechanism that synchronizes various biological processes with respect to the time of the day. While much progress has been made characterizing the molecular mechanisms underlying this clock, it is less clear how external light cues influence the dynamics of the core clock mechanism and thereby entrain it with the light-dark cycle. Zebrafish-derived cell cultures possess clocks that are directly light-entrainable, thus providing an attractive laboratory model for circadian entrainment. Here, we have developed a stochastic oscillator model of the zebrafish circadian clock, which accounts for the core clock negative feedback loop, light input, and the proliferation of single-cell oscillator noise into population-level luminescence recordings. The model accurately predicts the entrainment dynamics observed in bioluminescent clock reporter assays upon exposure to a wide range of lighting conditions. Furthermore, we have applied the model to obtain refitted parameter sets for cell cultures exposed to a variety of pharmacological treatments and predict changes in single-cell oscillator parameters. Our work paves the way for model-based, large-scale screens for genetic or pharmacologically-induced modifications to the entrainment of circadian clock function. Author summaryThe circadian clock is a key, cell-autonomous timing mechanism that is encountered in most organisms. It is entrained by environmental lighting conditions and in turn temporally coordinates most aspects of physiology according to the time of day. Cell lines derived from zebrafish are attractive experimental models for studying how clocks are entrained by light since they possess clocks that respond directly to light stimuli. Here we describe a mathematical model for the behavior of the circadian clock in zebrafish cell lines during exposure to a range of lighting conditions. Using this model, we can determine how different pharmacological treatments may affect the entrainment dynamics of the clock and the degree of synchronization of individual cells circadian clocks in bioluminescent clock reporter assays. Our current model is mathematically simple and thus easy to apply and extend in future studies.

systems biology↗