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Kubiak, A.

Publications and source records attributed to Kubiak, A..

3 recordsLinked to original sources

Tracking propagating cortical activity in MEG/EEG with a bilinear state-space model

Magnetoencephalography (MEG) and electroencephalography (EEG) are ideal for studying macroscopic neural dynamics, but non-invasive tracking of cortical traveling waves remains a major methodological challenge. Traditional inverse solutions assume spatiotemporal separability, restricting sources to fixed spatial topographies. Consequently, they struggle to capture the continuous spatial migration of cortical traveling waves and often misinterpret phase-locked static sources as spurious propagation. To address this fundamental limitation, we propose a dynamic state-space framework that explicitly accommodates the spatiotemporal inseparability of propagating neural activity. Our approach models the sensor signal as a bilinear combination of two states that evolve together: a fast, narrowband stochastic oscillator carrying the electrical time course, and a slowly evolving spatial topography that drifts through a data-driven singular value decomposition subspace. Both the rhythmic electrical time series and the migrating source trajectory track jointly via an Unscented Kalman Filter. We evaluated the method on realistically simulated MEG data and empirical resting-state MEG and EEG recordings targeting the occipital alpha rhythm. In simulations, the approach accurately recovered electrical time courses and spatial trajectories across varying signal-to-noise ratios, spatial envelope velocities up to 0.1 m/s, and distinct cortical geometries (calcarine and central sulci), significantly outperforming traditional minimum norm estimation and dipole fitting. Crucially, the model resists fabricating spurious propagation trajectories when presented with stationary, coherent dipoles. Application to empirical MEG and EEG recordings of the occipital alpha rhythm yields anatomically plausible, temporally cohesive propagation paths that explain significantly more sensor-level variance than static baselines. By embedding the evolving source geometry directly into the inverse solution, this framework provides a robust, proof-of-concept tool for the non-invasive investigation of macroscopic propagating brain dynamics.

neuroscience↗

Dose- and time-dependent effects of cobalt protoporphyrin IX on granulocyte mobilization and metabolic markers in mice

Recombinant granulocyte colony-stimulating factor (G-CSF) is the most commonly used agent for treating neutropenia and mobilizing hematopoietic stem cells (HSCs) for transplantation. However, some patients do not respond effectively to existing mobilization protocols. To address this, the development of new therapeutic approaches is necessary. One potential strategy is the pharmacological induction of endogenous mobilizing factors, which can be achieved through the administration of cobalt protoporphyrin IX (CoPP). CoPP induces mobilization of HSCs and granulocytes by increasing endogenous G-CSF production, though the optimal dosing and potential side effects remain unclear. The aim of our study was to optimize the dose and timing of CoPP administration and evaluate its safety in mobilizing cells from the bone marrow to the blood. Our results show that CoPP exerts a dose-dependent mobilizing effect, with the highest G-CSF levels and number of mobilized leukocytes observed in mice treated with 10 mg/kg of CoPP. While there were no severe adverse effects, there were mild fluctuations in markers of liver and kidney function, including a slight reduction in urea nitrogen (BUN) and glucose levels during the five days of administration. Additionally, although most parameters normalized within 30 days after treatment, the decrease in BUN persisted. Mice experienced short-term weight loss following CoPP administration, but they regained their initial weight within two weeks. By day 30, leukocyte counts, hematopoietic stem and progenitor cells (HSPCs) in bone marrow, and G-CSF concentration in the blood had returned to baseline. This study demonstrates that CoPP mobilizes cells from the bone marrow to the blood in a dose-dependent manner, with mild side effects, including temporary changes in biochemical markers and a sustained reduction in BUN levels.

pharmacology and toxicology↗

Stiffening of prostate cancer cells driven by actin filaments - microtubules crosstalk confers resistance to microtubule-targeting drugs

The crucial role of microtubules in the mitotic-related segregation of chromosomes makes them an excellent target for anticancer microtubule targeting drugs (MTDs) such as vinflunine, colchicine, and docetaxel. MTDs affect mitosis by directly perturbing the structural organization of microtubules. By a direct assessment of the biomechanical properties of prostate cancer cells exposed to different MTDs using atomic force microscopy, we show that cell stiffening is a candidate mechanism through which cancer cells preserve the original phenotype in response to the application of MTDs. While changes in cellular rigidity are typically mainly attributed to remodeling of the actin filaments in the cytoskeleton, here we provide evidence that cell stiffening can be driven by a crosstalk between actin filaments and microtubules in drug-treated cells. Our findings improve the interpretation of biomechanical data obtained for living cells in studies of various physiological and pathological processes.

biophysics↗