Biology subjects

Krzewinska, M.

Publications and source records attributed to Krzewinska, M..

5 recordsLinked to original sources

bioRxiv2026

Of bone and ivory: Eastern Atlantic sources of the medieval European walrus ivory trade discovered by ancient mitochondrial and nuclear DNA

Previous molecular archaeological research has made the surprising discovery that almost all studied European walrus finds dating between the 11th and 14th centuries CE seemed to be traded from the Norse colony of Greenland. But why has almost no walrus ivory from the Barents Sea region been detected in medieval Europe, despite its closer proximity and being mentioned in historical accounts? Here, we show that the full spatial extent of medieval Atlantic walrus hunting has been underestimated in previous analyses that targeted modified walrus skulls (rostra) with which pairs of attached tusks were traded, because destructive sampling of ivory artefacts is not always practicable. By analysing workshop offcuts from medieval Sigtuna, Sweden, we directly compare the geographical sources of walrus ivory with rostra, and show that isolated tusks were traded in different ways. We first resolve the genome-wide trans-Atlantic walrus population structure, discovering significant genome-wide nuclear differentiation between western and eastern Atlantic walrus populations. By employing spatially diagnostic nuclear SNPs (n = 144,986), we then use low-coverage sequence data to classify historical walrus rostrum and tusk specimens to either western or eastern Atlantic origin, and thus overcome previous limitations when provenancing walruses based on mitochondrial DNA alone. We find that all medieval walrus rostra are assigned exclusively towards the western Atlantic. In contrast, half of the medieval ivory specimens from Sigtuna are assigned to eastern Atlantic sources including Iceland and the Barents Sea region. Moreover, the objects of eastern origin precede those from Norse Greenland in time, suggesting sequential exploitation. Our observations resolve a discrepancy between earlier molecular inference and historical evidence and imply a significantly broader extent and impact of medieval ecological globalisation in the Arctic.

evolutionary biology↗

bioRxiv2022

aMeta: an accurate and memory-efficient ancient Metagenomic profiling workflow

Analysis of microbial data from archaeological samples is a rapidly growing field with a great potential for understanding ancient environments, lifestyles and disease spread in the past. However, high error rates have been a long-standing challenge in ancient metagenomics analysis. This is also complicated by a limited choice of ancient microbiome specific computational frameworks that meet the growing computational demands of the field. Here, we propose aMeta, an accurate ancient Metagenomic profiling workflow designed primarily to minimize the amount of false discoveries and computer memory requirements. Using simulated ancient metagenomic samples, we benchmark aMeta against a current state-of-the-art workflow, and demonstrate its superior sensitivity and specificity in both microbial detection and authentication, as well as substantially lower usage of computer memory. aMeta is implemented as a Snakemake workflow to facilitate use and reproducibility.

bioinformatics↗

bioRxiv2020

Archaeogenetic analysis of Neolithic sheep from Anatolia suggests a complex demographic history since domestication

Sheep was among the first domesticated animals, but its demographic history is little understood. Here we present combined analyses of mitochondrial and nuclear polymorphism data from ancient central and west Anatolian sheep dating to the Late Glacial and early Holocene. We observe loss of mitochondrial haplotype diversity around 7500 BCE during the early Neolithic, consistent with a domestication-related bottleneck. Post-7000 BCE, mitochondrial haplogroup diversity increases, compatible with admixture from other domestication centres and/or from wild populations. Analysing archaeogenomic data, we further find that Anatolian Neolithic sheep (ANS) are genetically closest to present-day European breeds, and especially those from central and north Europe. Our results indicate that Asian contribution to south European breeds in the post-Neolithic era, possibly during the Bronze Age, may explain this pattern.

evolutionary biology↗

bioRxiv2020

Competitive mapping allows to identify and exclude human DNA contamination in ancient faunal genomic datasets

BackgroundAfter over a decade of developments in field collection, laboratory methods and advances in high-throughput sequencing, contamination remains a key issue in ancient DNA research. Currently, human and microbial contaminant DNA still impose challenges on cost-effective sequencing and accurate interpretation of ancient DNA data. ResultsHere we investigate whether human contaminating DNA can be found in ancient faunal sequencing datasets. We identify variable levels of human contamination, which persists even after the sequence reads have been mapped to the faunal reference genomes. This contamination has the potential to affect a range of downstream analyses. ConclusionsWe propose a fast and simple method, based on competitive mapping, which allows identifying and removing human contamination from ancient faunal DNA datasets with limited losses of true ancient data. This method could represent an important tool for the ancient DNA field.

genomics↗

bioRxiv2017

Genomics of Mesolithic Scandinavia reveal colonization routes and high-latitude adaptation

Scandinavia was one of the last geographic areas in Europe to become habitable for humans after the last glaciation. However, the origin(s) of the first colonizers and their migration routes remain unclear. We sequenced the genomes, up to 57x coverage, of seven hunter-gatherers excavated across Scandinavia and dated to 9,500-6,000 years before present. Surprisingly, among the Scandinavian Mesolithic individuals, the genetic data display an east-west genetic gradient that opposes the pattern seen in other parts of Mesolithic Europe. This result suggests that Scandinavia was initially colonized following two different routes: one from the south, the other from the northeast. The latter followed the ice-free Norwegian north Atlantic coast, along which novel and advanced pressure-blade stone-tool techniques may have spread. These two groups met and mixed in Scandinavia, creating a genetically diverse population, which shows patterns of genetic adaptation to high latitude environments. These adaptations include high frequencies of low pigmentation variants and a gene-region associated with physical performance, which shows strong continuity into modern-day northern Europeans.

genomics↗