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Kopuchian, C.

Publications and source records attributed to Kopuchian, C..

4 recordsLinked to original sources

Continental diversification and insular speciation in a widespread passerine (Troglodytes musculus) in southern South America

Understanding how the evolutionary dynamics of geographically widespread species play out in space and time is critical for uncovering the processes shaping biodiversity. We integrated mitochondrial DNA and genome-wide SNPs to investigate the history of diversification of the Southern House Wren (Troglodytes musculus) in southern South America and its insular relative, Cobbs Wren (T. cobbi), from the Malvinas/Falkland Islands (MFI). T. musculus is an abundant and widespread species, and by studying its population structure and demographic history we aim to uncover the processes that may have shaped the evolutionary history of this and other co-distributed taxa in southern South America. All analyses indicate a latitudinal divergence, with an initial split between northern populations (Bolivia, Northern and Central Argentina, Uruguay) and southern populations from Patagonia and the MFI. Shortly after this initial divergence, further diversifications occurred, including the colonization of the MFI from Patagonia, where this newly formed insular population became isolated from the continent, and the split between an Andean lineage and a widespread, lowland lineage occurring in lowland Bolivia, Northern and Central Argentina and Uruguay. Both the timing of these splits and the mitochondrial and genomic patterns of variation uncovered in T. musculus are consistent with a major role of glaciations -and particularly the Great Patagonian Glaciation-in the diversification of this species in the southern Neotropics. The negligible gene flow between the MFI and the continent, which derived in the formation of a new species, Cobbs Wren, contrasts with the notorious gene flow in the secondary, post-glacial contact zones between the northern and southern lineages, although with reduced gene flow between the Andean and lowland populations. We also observed cases of mito-nuclear discordance, highlighting the value of multi-locus approaches in revealing complex evolutionary histories. These results underscore how historical divergence, ecological barriers and corridors, and secondary contact after varying degrees of differentiation in allopatry jointly shape population structure and genetic diversity, with implications for understanding the diversification of widely distributed taxa.

evolutionary biology↗

A pangenomic approach reveals the sources of genetic variation fueling the rapid radiation of Capuchino Seedeaters

The search for the genetic basis of phenotypes has primarily focused on single nucleotide polymorphisms, often overlooking structural variants (SVs). SVs can significantly affect gene function, but detecting and characterizing them is challenging, even with long-read sequencing. Moreover, traditional single-reference methods can fail to capture many genetic variants. Using long-reads, we generated a Capuchino Seedeater (Sporophila) pangenome, including 16 individuals from seven species, to investigate how SVs contribute to species and coloration differences. Leveraging this pangenome, we mapped short-read data from 127 individuals to perform FST scans and genome-wide association studies. Species divergence primarily arises from SNPs and indels (< 50 bp) in non-coding regions of melanin-related genes, as larger SVs rarely overlap with divergence peaks. One exception was a 55 bp deletion near the OCA2 and HERC2 genes, associated with feather pheomelanin content. These findings support the hypothesis that the reshuffling of small regulatory alleles, rather than larger species-specific mutations, accelerated plumage evolution leading to prezygotic isolation in Capuchinos. TeaserSNPs and indels primarily shape species differences and plumage diversity in Capuchino Seedeaters.

evolutionary biology↗

Diet composition of reintroduced Red-and-Green Macaws (Ara chloropterus) reflects gradual adaption to life in the wild

Over the last two centuries, the Red-and-green Macaw (Ara chloropterus) has become locally extinct in Argentina. In an attempt to restore its key ecosystem functions as both disperser and regulator of large-seeded plants, a reintroduction project was initiated at the Ibera National Park in northeastern Argentina. The ability of released individuals to find food is crucial, in particular when working with captive-bred animals, as long-term establishment of a self-sustaining population depends on their short-term ability to exploit wild food sources. Monitoring of feeding habits is usually conducted through behavioral observation, but in recent years DNA metabarcoding has emerged as an alternative for obtaining highly resolved data on diet composition. In this study we use a combination of both techniques to characterize the breadth and composition of the reintroduced macaws diet. In addition, we evaluate the efficiency of both direct field observations and metabarcoding of feces as techniques to assess diet composition. Individuals fed on a variety of plant species (n = 49) belonging to a broad phylogenetic spectrum (28 families). Dietary richness estimated by direct observation and metabarcoding was similar, though smaller than the combination of the two datasets as both techniques detected at least 15 species not recorded by the other method. While the total number of detected species was higher for observational data, the rate of species-detection per sampling day was higher for metabarcoding. These results suggest that a combination of both methods is required in order to obtain the most accurate account of the total diversity of the diet of a species. The ability of the reintroduced macaws to successfully exploit local food resources throughout the year indicates a good level of adjustment to the release site, an important step towards the creation of a stable, self-sustaining population of Red-and-green Macaws in Northern Argentina. RESUMENEn el transcurso de los ultimos dos siglos, el Guacamayo Rojo (Ara chloropterus) se ha extinguido en la Argentina. Buscando recuperar su rol ecologico tanto de dispersor como de depredador de semillas de gran tamano, se comenzo un proyecto de reintroduccion de la especie en el Parque Nacional Ibera, en la region noreste del pais. La capacidad para encontrar alimento por parte de los individuos liberados es crucial, particularmente cuando se trabaja con animales provenientes de condiciones de cautiverio, ya que el establecimiento de una poblacion autosuficiente a largo plazo dependera de la habilidad de estos para explotar fuentes de alimento silvestre a corto plazo. El monitoreo de habitos alimenticios se realiza usualmente a traves de observaciones comportamentales. Sin embargo, en los ultimos anos la tecnica del meta-codigo de barras de ADN ha surgido como una alternativa para la obtencion de datos de composicion dietaria con alto nivel de resolucion. En este estudio, utilizamos una combinacion de ambas tecnicas para caracterizar la amplitud y composicion de la dieta de los guacamayos reintroducidos. A su vez, evaluamos la eficiencia de la observacion directa y el codigo de barras genetico de heces como tecnicas para evaluar la composicion de la dieta. Los individuos se alimentaron de una amplia variedad de especies (n = 49), abarcando un amplio espectro filogenetico (28 familias). La riqueza dietaria estimada por observacion directa y por meta-codigo de barras genetico fue similar, aunque menor a la resultante de la combinacion de todos los datos ya que ambas tecnicas detectaron al menos 15 especies no registradas por el otro metodo. Mientras que el numero total de especies detectadas fue mayor para los metodos observacionales, la tasa de deteccion de especies por dia de muestreo fue mayor para el analisis genetico. Estos resultados sugieren que una combinacion de ambos metodos es necesaria para obtener la descripcion mas precisa posible de la diversidad dietaria total de una especie. La capacidad de los guacamayos reintroducidos para explotar recursos alimenticios locales a lo largo del ano estaria indicando un buen nivel de adaptacion al sitio de liberacion, un paso muy importante hacia el establecimiento de una poblacion de Guacamayo Rojo estable y autosuficiente en el norte de Argentina. Palabras claveAra chloropterus, Conservacion, Dieta, Frugivoria, Meta-codigo de barras, Guacamayo Rojo, Reintroduccion, Ecologia trofica LAY SUMMARYO_LIThe Red-and-green Macaw reintroduction project aims to restore this species to Argentina, where it is locally extinct. To assess if reintroduced macaws are successfully adapting to life in the wild, we studied their foraging habits at the Ibera National Park. Their food consumption was observed visually, and their feces were analyzed with molecular methods for traces of the consumed plants. C_LIO_LIMacaws fed from a large diversity of food items, exhibiting a flexible diet which varied with fruit availability in different months. A combination of both methods was required to obtain the most accurate account of the total diversity of the diet of a species. C_LIO_LIThe reintroduced macaws were able to successfully locate and exploit food resources throughout the year, indicating a good level of adjustment to the release site. C_LI

ecology↗

A NEW SPECIES OF SEEDEATER (EMBERIZIDAE: SPOROPHILA) FROM THE IBERA GRASSLANDS, IN NORTHEAST ARGENTINA

We describe a new species of capuchino of the genus Sporophila (Emberizidae) of the Esteros del Ibera, province of Corrientes, in northeastern Argentina. This species would have remained unidentified due to lack of ornithological explorations in the central area of the Esteros del Ibera. It has been confused with immature individuals of other Sporophila species. We made observations of behavior and habitat, playback experiments, comparative analyzes of the vocalizations and plumage with other sympatric species of the same genus, and we found this species, which we have named Sporophila iberaensis, inhabiting wet grasslands from the edges of the marshes, having a unique vocal repertoire and a unique plumage. Because of its restricted geographical distribution and the threats that have their habitat, this new species should be categorized as Vulnerable on the IUCN Red List.

zoology↗