bioRxiv Science⌕ Search

Biology subjects

Kopriva, S.

Publications and source records attributed to Kopriva, S..

At least 19 recordsLinked to original sources

Environmental drivers of heritable trait variation and lag of adaptation to climate in Hordeum murinum

1. Most plant species are genetically differentiated among populations, often reflected by phenotypic trait variation that corresponds to local adaptation. Yet the strength of local adaptation and heritable contribution to phenotypic traits vary across traits, species, and environments. Additionally, climate change is rapidly altering environmental conditions, and the climate may shift faster than populations can adapt or track the change via dispersal, resulting in adaptive lags. However, it remains unclear how widespread such adaptive lags are across plant species. 2. We focused on Hordeum murinum, an annual ruderal grass widespread in Europe. We combined continental-scale in situ measurements of 2070 plants across 207 populations with common garden experiments across two contrasting climates and two soil types to disentangle heritable variation from phenotypic plasticity and assess potential adaptive lags under climate change. 3. We found that heritable variation was pronounced in developmental traits, particularly flowering time and plant height, while seed weight, reproductive investment and SLA showed intermediate heritable contribution, and flag leaf area and total biomass were primarily plastic. Heritable trait variation was strongly associated with temperature at the populations origin, and trait clines were consistent with in situ patterns, suggesting that temperature is the main driver of genetic differentiation in H. murinum. However, we detected that fitness peaked in populations originating from warmer climates, indicating that evolutionary responses may not keep pace with rapid environmental shifts. 4. Synthesis: Our results highlight that H. murinum harbors substantial heritable variation, shaped primarily by temperature. However, the pace of evolutionary change may be insufficient to track ongoing climate change, leaving populations potentially vulnerable to future environmental conditions.

ecology↗

Nutrient Availability Modulates Beneficial Effect of Bacterial Community Volatiles and Contact-Dependent Interactions Differently

Plant growth-promoting bacteria enhance plant performance, yet how different modes of plant-microbe interaction shape nutrient-specific host responses remains poorly understood. In particular, it is unclear how direct bacterial contact and volatile-mediated interactions originating from the same bacterial community differentially regulate plant nutrient acquisition pathways. Here, we investigated how a 16-member synthetic bacterial community (16SC) affects plant growth, nutrient status, signaling, and metabolite profiles under full nutrient supply as well as nitrogen (N), sulfur (S), and phosphorus (P) limitation in Arabidopsis thaliana. We show that volatile organic compounds (VOCs) emitted by the 16SC promote shoot growth under nitrate limitation and full nutrient conditions, whereas this growth promotion is lost under sulfur- and phosphorus-limiting conditions. In contrast, direct interaction (DBC) between plants and the 16SC abolishes growth promotion under all three nutrient-limiting conditions. These nutrient-dependent phenotypes correlate with distinct regulation of nutrient transporters and key transcriptional regulators involved in N (NRT1;1 / NLP7), S (SULTR1;2 / SLIM1/EIL3), and P (PHO2 / PHR1) signaling pathways. Genetic analyses using nutrient transporter mutants revealed that VOC-induced growth promotion requires functional NRT1;1 and SULTR1;2 transporters, whereas growth promotion mediated by direct bacterial contact is retained in the corresponding mutants. This uncoupling of VOC- and contact-dependent effects indicates that distinct host regulatory pathways underlie bacterial community growth promotion depending on the interaction mode. Together, our findings demonstrate that bacterial community-mediated plant growth promotion is strongly shaped by nutrient context and interaction mode, and that volatile-mediated and contact-dependent mechanisms engage separable host nutrient regulatory networks.

plant biology↗

Dozens of genetic variants sustain adaptation to urban spatial heterogeneity in Arabidopsis thaliana

Urbanization creates mosaics of microhabitats that sustain diverse plant communities and offer untapped opportunities to understand contemporary ecological and evolutionary processes. Using a city-wide colonization experiment in Cologne (Germany), we identified the environmental factors limiting establishment and persistence of the ruderal species Arabidopsis thaliana and the genetic variants enabling adaptation. We show that standing genetic variation is essential for realizing the species urban niche, enabling rapid adaptation to fine-scale gradients in disturbance, vegetation, and soil conditions. Despite originating from only two parental genotypes, populations evolved substantial adaptive differentiation within three generations, revealing a highly polygenic basis of local adaptation. More broadly, our approach establishes cities as powerful open-air laboratories for uncovering and fostering ecological and evolutionary processes that generate and sustain biodiversity in human-dominated landscapes.

evolutionary biology↗

Root endophyte sulfur metabolites enhance redox balance and drought tolerance in Arabidopsis

Drought is a major consequence of climate change and significantly limits crop productivity. Plant growth-promoting bacteria offer a promising solution to mitigate drought stress. The root endophyte Pseudomonas argentinensis SA190 has been shown to enhance plant performance under drought stress conditions, but the mechanistic basis of SA190s beneficial effects remained unclear. Given the pivotal role of sulfur-containing compounds in abiotic stress responses, we investigated multiple sulfur-related Arabidopsis mutants under drought stress. We found that SA190 enhances sulfate uptake and promotes glutathione (GSH) accumulation in shoots under stress conditions. SA190 treatment improved the GSH/GSSG ratio, indicating an enhanced redox balance under drought. Selective inhibition of Arabidopsis GSH biosynthesis using buthionine sulfoximine (BSO) confirmed the essential contribution of bacterial GSH to drought stress. In addition, by generation and use of bacterial mutants deficient in the GSH synthesis pathway, we show that the bacteria directly provide Arabidopsis with either GSH or its precursor {gamma}-EC. In summary, SA190 promotes drought tolerance by supplying the host plant with additional GSH thereby maintaining cellular redox homeostasis and enhancing drought stress resilience.

Plant Biology↗

Metabolic profiling and genome-scale modelling uncover mechanistic drivers of microbiome stability in synthetic maize root community

Stability is a desirable property for agricultural microbiomes, but there is a poor understanding of the mechanisms that mediate microbial community stability. A representative bacterial synthetic community from maize roots has been proposed by Niu et al. (2017, PNAS, 114:E2450) as a model system to study microbiome stability. This SynCom assembles stably when all seven members are present, but community diversity collapses without the keystone E. ludwigii strain. In this study, we used complementary in vitro experiments and in silico metabolic modelling to assess the role of metabolites for the stability of this SynCom, by defining the metabolic niches occupied by each strain, as well as their cross-feeding phenotypes and B-vitamin dependencies. We show that the individual member strains occupy complementary metabolic niches, measured by the depletion of distinct metabolites in exometabolomic experiments, as well as contrasting growth phenotypes on diverse carbon substrates, patterns which are largely recapitulated by computational simulations. Minimal medium experiments show that the established seven-member community comprises a mixture of prototrophic and auxotrophic strains. Correspondingly, experimental and in silico cross-feeding phenotypes showed that spent media harvested from the prototrophic strains can sustain growth of two auxotrophs and let to the identification of B-vitamin dependencies. Altogether, this study highlights the complementary power of in vitro and in silico approaches and suggests that the metabolic mechanisms of this SynCom can serve as design principles to inform the rational assembly of stable plant-associated microbial communities.

microbiology↗

Differential photosynthetic response to phosphate starvation in C3 and C4 Flaveria species

C4 photosynthesis is a CO2-concentration mechanism that separates CO2 fixation between two cell types, thereby reducing photorespiration and making C4 plants more efficient than their C3 counterparts. While the C4 cycle has evolved multiple times across different genera, this study evaluates very closely related C3 and C4 species within the genus Flaveria. Apart from their carbon metabolism, C4 plants also possess adaptations in their mineral nutrition. One key nutrient which is also directly involved in photosynthesis is phosphorus. It is absorbed by the plant in the form of inorganic phosphate and is an essential component of DNA, ATP, lipids, and carbohydrates. In the Flaveria C4 species, but not in the C3 species, phosphate limitation was shown to affect the dark reactions of photosynthesis. This study investigates how phosphate deficiency impacts the light reactions in C3 and C4 Flaveria plants. We observed a differential response in the functionality of photosynthetic energy conversion between the two species. When exposed to a limited phosphate supply, the C3 species reduced its linear electron transport rate while dissipating excess energy through high-energy quenching, which was regulated by a higher pH gradient across the thylakoid membrane. In contrast, the C4 species did not regulate its photosynthetic light reaction under phosphate limitation. Instead, it exhibited increased stress levels, evidenced by a stronger biomass reduction and the induction of stress markers in the leaves. Additionally, this study uncovered an acceleration in NPQ relaxation during phosphate limitation, regardless of the photosynthesis type. HighlightPhosphate deficiency reduced linear electron transport rates and induced dissipation of excess energy through non-photochemical quenching in the C3 Flaveria species, while in the C4 species, despite elevated stress levels, the photosynthetic light reactions were unaffected.

plant biology↗

Chemical modulation of chloroplast de- and re-differentiation reveals a role for the SAL1-PAP retrograde pathway in facilitating plastid transitions

Plastids are dynamic organelles that remodel their composition, ultrastructure, and function according to developmental and environmental demands. The synthetic molecule X57 induces the conversion of leaf chloroplasts into tocopherol-rich plastids lacking thylakoids and containing proliferating plastoglobules. Removal of X57 triggers chloroplast re-differentiation, enabling precise spatial-temporal dissection of these transitions. X57 directly binds and inhibits the phosphatase SAL1, causing accumulation of its substrate 3'-phosphoadenosine 5'-phosphate (PAP), a retrograde signal that modulates nuclear gene expression. SAL1 inhibition and subsequent PAP accumulation activate a cascade that depletes cytokinins and down-regulates GOLDEN2-LIKE1 (GLK1) and other transcription factors involved in chloroplast biogenesis. SAL1-defective mutants fail to undergo this signaling pathway. The SAL1-PAP-mediated weakening of chloroplast identity preconditions plastids for their eventual conversion into storage-type organelles upon X57-promoted accumulation of tocopherols. After X57 withdrawal, photosynthetic gene expression and chloroplast functions are restored. This framework identifies key molecular mechanisms underlying chloroplast plasticity, a central process in biology.

plant biology↗

A fungal root endophyte functionally complements host immunity and mitigates natural immune variation in Arabidopsis

Beneficial root-associated microbes can enhance plant resilience by complementing aspects of host immunity. The fungal root endophyte Serendipita indica (Si) is known to promote plant growth and confer broad stress tolerance. To assess how natural host genetic variation influences Si-mediated protection, we screened 47 Arabidopsis thaliana accessions for susceptibility to the fungal pathogen Bipolaris sorokiniana (Bs) with and without Si colonization. All accessions benefited from Si, indicating that endophyte-mediated disease mitigation occurs broadly across diverse host genotypes. A focused comparison of two genetically and geographically proximate Swedish accessions, T510 and T530, which displayed the most divergent protection scores, revealed substantial differences in Bs susceptibility. Transcriptome profiling under bi- and tripartite colonization showed conserved defense responses in both accessions. Bs infection downregulated growth- and development-related genes, consistent with a growth-immunity trade-off, with T530 exhibiting higher Bs colonization and a stronger transcriptional response than T510. Co-colonization with Si effectively suppressed pathogen growth and disease symptoms in both accessions. Comparative genomic and transcriptomic analyses identified four immune receptor genes, including the TIR-NLR ISI, present in T510 but absent in T530. An isi T-DNA insertion mutant phenocopied the heightened Bs susceptibility of T530, confirming that ISI contributes to root immunity, while Si-mediated protection remained intact despite increased pathogen susceptibility. Together, these findings demonstrate that fungal endophytes can mitigate the functional consequences of natural immune variation and enhance the resilience of genetically diverse plant populations. HighlightsO_LIS. indica confers broad protection against B. sorokiniana largely independent of host genotype or pathogen susceptibility. C_LIO_LIThe TIR-NLR immune receptor ISI contributes to root immunity but is not essential for S. indica-mediated protection. C_LIO_LIBeneficial endophytes can mitigate natural immune variation effects and support overall plant health. C_LI

ecology↗

Loss of tRNA uridine thiolation affects mRNA translation, protein production, and sulfur-compound metabolism in Arabidopsis

The uridine at position 34 of tRNA anticodon loops is always modified at variable levels depending on environmental conditions, but a function for this highly conserved modification has not been firmly established. Using Arabidopsis thaliana, we show that the thiolation of U34 is a prerequisite for the subsequent modifications at position 32 and 37 of the tRNALys(UUU) anticodon loop, revealing a novel modification network. Surprisingly, the level of tRNALys(UUU) is strongly increased rather than reduced in the ctu1 or ctu2 mutant backgrounds that prevent these modifications. This suggests the existence of a regulatory feedback loop that drives the transcription of this specific tRNA gene family. Furthermore, we observed that the ability of the ribosome to decode AAA, GAA and CAA codons is impaired when the thiol group is lost, leading to a reduction in protein production, especially for genes enriched in these codons. Finally, we show that loss of tRNA thiolation results in variations in levels of many proteins involved in sulfur-compound metabolism and several sulfur-containing metabolites, suggesting that the level of tRNA thiolation may act as a sensor that regulates these processes.

molecular biology↗

Root growth in Arabidopsis depends on the amount of glutathione and not the glutathione redox potential

Cell cycle activity and hence plant growth strictly depends on glutathione homeostasis. Despite compelling evidence for this dependency based on glutathione depletion, the cause for the cell cycle arrest had remained unclear. Cell cycle control may depend on either the absolute amount of glutathione or on the glutathione redox potential (EGSH). To unambiguously distinguish those two options, we characterized an allelic series of six Arabidopsis mutants affected in glutamate-cysteine ligase, which catalyses the first step for the biosynthesis of reduced glutathione (GSH). When grown under the same conditions, even mutants with 20% and 50% of wild-type GSH amounts are slightly stunted. The most severely compromised mutants, zir1 and rml1, were crossed with either gr1, which lacks cyto-nuclear glutathione disulfide reductase and was used to induce a pronounced shift in EGSH, or with bir6, which has a diminished glutathione consumption and thus exhibits slightly increased levels of GSH. Based on theoretical considerations, these levels are not expected to shift the EGSH to any significant extent. Our study shows that deleting GR1 in the zir1 or rml1 background does not result in an obvious phenotypic change. By contrast, deleting BIR6 was sufficient to suppress the growth arrest in rml1 and to attenuate the growth in zir1. These findings demonstrate that root growth is dependent on the availability of sufficient amounts of GSH, and not affected by pronounced changes in EGSH. This insight provides a decisive step towards understanding the mechanisms underpinning the proposed role of glutathione in cell cycle and growth control. HighlightCrosses of GSH-deficient Arabidopsis mutants with mutants affected in glutathione reduction or GSH consumption pinpoint the GSH amount rather than the glutathione redox potential as causative for changes in root growth.

plant biology↗

SNRK3.15 is a crucial component of the sulfur deprivation response in Arabidopsis thaliana

Sulfate deprivation (-S) results in numerous metabolic and phenotypic alterations in plants. Kinases are often key players in transducing nutrient status signals to molecular components involved in metabolic and developmental program regulation, but despite the physiological importance of sulfur, to date, no signaling kinases have been identified in sulfur-deficiency signaling response programs. Here we show that the serine/threonine protein kinase CIPK14/SNRK3.15 plays a regulatory role in the -S response in Arabidopsis thaliana seedlings. Multiple molecular and physiological responses to -S are attenuated in snrk3.15 mutants, including both early adaptive responses and later emergency salvage processes including nutrient deficiency induced senescence. When grown in soil with sufficient sulfur supply, snrk3.15 mutants showed no clear phenotypes, including no difference in seed sulfur content. Lastly, the proteome dataset generated from Col-0 and snrk3.15.1 Arabidopsis seedlings under -S conditions for this project is the first of its kind and will be a valuable research resource. Proteomics data are available via ProteomeXchange with identifier PXD046612.

plant biology↗

Multilevel analysis of response to plant growth promoting and pathogenic bacteria in Arabidopsis roots and the role of CYP71A27 in this response

Understanding how plants distinguish between commensal and pathogenic microorganisms is one of the major challenges in the plant microbe interaction research. We previously identified a gene encoding CYP71A27 connected to camalexin, which is necessary for a plant growth promoting (PGP) activity of a number of bacterial strains. To dissect its function, we compared multilevel responses in roots of wild type Arabidopsis and the cyp71A27 mutant to two bacterial strains, a PGP Pseudomonas fluorescens CH267 and a pathogen Burkholderia glumeae PG1. We show that incubation with these bacteria leads to significant and distinct transcriptional reprogramming. This is accompanied by a proteome remodelling in both shoots and roots and profound changes in accumulation of many metabolites, primarily sugars, amino acids, and TCA cycle intermediates, but also by alterations in the ionome. We then analysed the mutant cyp71a27 and identified number of genes and proteins differently regulated, particularly after interaction with the PGP strain, but only a very mild impact of the mutation on root metabolites and exudates. We analysed a variety of mutants in genes differentially regulated by Pseudomonas sp. CH267 in cyp71a27 and revealed that their response to this PGP bacterial strain is similar to cyp71a27. Thus, it seems that CYP71A27 is a non-canonical P-450 without a metabolic function but active in signalling pointing to a regulatory role of the CYP71A27 gene, particularly in interaction with a plant growth promoting bacteria.

plant biology↗

Cysteine signaling in plant pathogen response

The amino acid cysteine is the precursor for a wide range of sulfur-containing functional molecules in plants, including enzyme cofactors and defense compounds. Due to its redox active thiol group cysteine is highly reactive. Synthesis and degradation pathways are present in several subcellular compartments to adjust the intracellular cysteine concentration. However, stress conditions can lead to a transient increase in local cysteine levels. Here we investigate links between cysteine homeostasis and metabolic signaling in Arabidopsis thaliana. The systemic proteome response to cysteine feeding strongly suggests that Arabidopsis seedlings interpret accumulation of cysteine above a certain threshold as a signal for a biotic threat. Cysteine supplementation of Arabidopsis plants via the roots increases their resistance to the hemibiotrophic bacterium Pseudomonas syringae confirming the protective function of the cysteine induced defense pathways. Analysis of mutant plants reveals that the balance of cysteine synthesis between the cytosol and organelles is crucial during Arabidopsis immune response to Pseudomonas syringae. The induction profile of pathogen responsive proteins by cysteine provides insight into potential modes of action. Our results highlight the role of cysteine as a metabolic signal in the plant immune response and add evidence to the emerging concept of intracellular organelles as important players in plant stress signaling.

plant biology↗

Lipid droplet protein Perilipin 2 is critical for the regulation of insulin secretion through beta cell lipophagy and glucagon expression in pancreatic islets

Knockdown (KD) of lipid droplet (LD) protein perilipin 2 (PLIN2) in beta cells impairs glucose-stimulated insulin secretion (GSIS) and mitochondrial function. Here, we addressed a pathway responsible for compromised mitochondrial integrity in PLIN2 KD beta cells. In PLIN2 KD human islets, mitochondria were fragmented in beta cells but not in alpha cells. Glucagon but not insulin level was elevated. While the formation of early LDs followed by fluorescent fatty acids (FA) analog Bodipy C12 (C12) was preserved, C12 accumulated in mitochondria over time in PLIN2 KD INS-1 cells. A lysosomal acid lipase inhibitor Lali2 prevented C12 transfer to mitochondria, mitochondrial fragmentation, and the impairment of GSIS. Direct interactions between LD-lysosome and lysosome-mitochondria were increased in PLIN2 KD INS-1 cells. Thus, FA released from LDs by microlipophagy cause mitochondrial changes and impair GSIS in PLIN2 KD beta cells. Interestingly, glucolipotoxic condition (GLT) caused C12 accumulation and mitochondrial fragmentation similar to PLIN2 KD in beta cells. Moreover, Lali2 reversed mitochondrial fragmentation and improved GSIS in human islets under GLT. In summary, PLIN2 regulates microlipophagy to prevent excess FA flux to mitochondria in beta cells. This pathway also contributes to GSIS impairment when LD pool expands under nutrient load in beta cells.

molecular biology↗

Perilipin 5 Phosphorylation is Dispensable for Upregulation of Hepatic Lipid Metabolism Genes upon Fasting but Required for Insulin Receptor Substrate 2 Expression in Male Mice

ObjectivePerilipin 5 (PLIN5) is a lipid droplet protein highly expressed in cells that actively oxidize fatty acids. Previous in vitro studies have revealed that PLIN5 phosphorylation (p-PLIN5) at serine 155 by PKA is critical for transcriptional regulation of PPARa target genes by which PLIN5 adapt cells for fatty acid oxidation. We aim to determine the extent of p-PLIN5 in vivo and the consequence of impaired PLIN5 phosphorylation in the liver by using a whole-body knock-in of phosphorylation resistant PLIN5 (SA/SA) in mice. MethodsWe measured PLIN5 and p-PLIN5 with mass spectrometry and Phos-tag gels. We assessed serum chemistry in WT and SA/SA mice upon fasting. RNA sequencing and qPCR compared the gene expression in the liver of SA/SA and WT mice after overnight fast. ResultsPlin5 phosphorylation at S155 was increased in the liver LD fraction of fasted mice compared with that of fed mice by mass spectrometry (p<0.05). qPCR of key lipid metabolism genes did not differ between WT and SA/SA liver upon fasting. Male SA/SA mice had a higher fasting blood glucose (p<0.05) without a difference in body weight, serum insulin, or serum lipids. IRS2 was reduced in the liver of fasted male SA/SA mice (p<0.05). ConclusionPLIN5 S155 phosphorylation is dispensable for the upregulation of lipid metabolism genes important for fasting response in vivo. Impaired phosphorylation also had little effect on serum lipids or liver TG. However, SA/SA mice showed decreased IRS2 expression in the liver, which may contribute to glucose intolerance in SA/SA male mice.

molecular biology↗

Chloroplasts lacking class I glutaredoxins are functional but show a delayed recovery of protein cysteinyl redox state after oxidative challenge

Redox status of protein cysteinyl residues is mediated via glutathione (GSH)/glutaredoxin (GRX) and thioredoxin (TRX)-dependent redox cascades. An oxidative challenge can induce post-translational protein modifications on thiols, such as protein S-glutathionylation. Class I GRX are small thiol-disulfide oxidoreductases that reversibly catalyse S-glutathionylation and protein disulfide formation. TRX and GSH/GRX redox systems can provide partial backup for each other in several subcellular compartments, but not in the plastid stroma where TRX/light-dependent redox regulation of primary metabolism takes place. While the stromal TRX system has been studied at detail, the role of class I GRX on plastid redox processes in vivo is still unknown. We generate knockout lines of GRXC5 as the only chloroplast class I GRX of the moss Physcomitrium patens. While we find that class I PpGRXC5 has high activities in glutathione-dependent oxidoreductase assays using hydroxyethyl disulfide or redox-sensitive GFP2 (roGFP2) as substrates in vitro, {Delta}grxc5 plants show no detectable growth defect or stress sensitivity, in contrast to mutants with a less negative stromal EGSH ({Delta}gr1). Using stroma-targeted roGFP2, we show increased protein Cys oxidation and decreased reduction rates after oxidative challenge in {Delta}grxc5 plants in vivo, indicating kinetic uncoupling of the protein Cys redox state from glutathione redox potential. Protein Cys disulfide and S-glutathionylation formation rates after H2O2 treatment remained unchanged. Lack of class I GRX function in the stroma did not result in impaired carbon fixation. Our observations suggest specific roles for class I GRX in the efficient redox equilibration between EGSH and protein Cys in the plastid stroma as well as negligible cross-talk with metabolic regulation via the TRX system. We propose a model for stromal class I GRX function as efficient kinetic couplers of protein Cys redox state to the dynamic stromal EGSH and highlight the importance of identifying in vivo target proteins of GRXC5. One sentence summaryRemoval of class I GRX activity in the chloroplast stroma of P. patens kinetically uncouples GRX-dependent cysteine redox changes from the local glutathione redox potential, without an effect on NPQ or photosynthetic carbon reactions.

plant biology↗

Timing of root barriers controls soil-to-shoot integration of rhizosphere status

In roots, formation of the Casparian strip in the endodermal cell walls provides a mechanism for selective uptake of nutrients and water. Establishment of this filter is under spatial surveillance by a receptor-ligand mechanism termed the Schengen pathway. This system provides a mechanism to initiate downstream signaling responses in case of dysfunctional barrier establishment. Due to this interconnected nature, the endogenous physiological role of this survaillance mechanism remain difficult to untangle from the direct barrier function. This is in particularly evident in complex growth setups where multiple inputs are integrated into general whole-plant responses. In this work, we address this by rewiring the genetic network that underlies root barrier formation. We create plants with enhanced, Schengen-independent Casparian strip formation that are not only suitable to probe the role of stronger barrier establishment, but also to evaluate the associated signaling output independently. With focus on the latter, we subjected the rewired plants, as well as a number of established barrier mutants, to multifaceted growth conditions including nitrogen fertilized agricultural soil conditions. By profiling their above- and belowground (a)biotic responses our work reveals that, while increased Casparian strip formation mainly provides the plant with an improved stress resistance, the Schengen pathway is necessary for establishment of a growth-promoting root microbiome and serves to convey information of soil nitrogen status to the shoot. This identifies the Schengen pathway as an essential receptor-based signaling hub for adaptive integration of barrier status, nutritional responses and (a)biotic signaling between above- and belowground tissues.

plant biology↗

Arabidopsis MEB3 functions as a vacuolar transporter to regulate iron accumulation in roots

Iron is an essential nutrient for plant photosynthesis and development, but excess iron leads to stress. After absorption from the soil, plants store iron in roots and distribute it to shoots via long-distance transport. Vacuole serves as the iron storage organ in root cells, maintaining cellular iron homeostasis, and vacuolar iron transporter (VIT) family proteins have been identified as plant vacuolar iron transporters. However, the contribution of vacuolar iron transporters to the overall iron homeostasis of plants is not fully understood. Here, we show that MEMBRANE PROTEIN OF ER BODY 3 (MEB3), a VIT family member, is a vacuolar iron transporter involved in root-shoot iron distribution in Arabidopsis thaliana. Heterologous expression of Arabidopsis MEB3 in yeast restored the iron resistance phenotype of the vacuolar iron transporter deficient mutant ccc1, indicating that MEB3 regulates iron transport. In Arabidopsis, MEB3 was expressed in almost all tissues, albeit to higher levels in roots and seedlings, and the MEB3 protein localized to the tonoplast. At low iron concentration, meb3 knockout mutants accumulated less iron in shoots, suggesting that MEB3 promotes iron accumulation in shoots. Consistently, meb3 mutants exhibited reduced growth compared with the wild type upon transfer to iron-deficient medium. However, at high iron concentration, meb3 mutants accumulated more iron in shoots and less iron in roots than the wild type, indicating the impairment of proper iron distribution in meb3 mutants. These findings demonstrate that MEB3 is a vacuolar iron transporter involved in root-to-shoot iron distribution.

plant biology↗