bioRxiv Science⌕ Search

Biology subjects

Koenen, H. J. P. M.

Publications and source records attributed to Koenen, H. J. P. M..

2 recordsLinked to original sources

CD8+ T cells drive myofibroblast activation and contraction via JAK/STAT3 and TGFβ signaling

BackgroundFibrosis is a major cause of morbidity and mortality in rheumatic connective tissue diseases. In these conditions, fibrotic tissues are characterized by the infiltration of CD8+ T cells and pro-fibrotic myofibroblasts. However, the role of CD8+ T cells in driving myofibroblast activity remains unexplored. Our aim was to investigate this interaction between CD8+ T cells and skin myofibroblasts and to elucidate its underlying mechanisms. MethodsPrimary skin-derived myofibroblasts were co-cultured with peripheral blood mononuclear cells (PBMCs) or sorted T cells in a 3D collagen type I hydrogel. To model autoimmunity, allogeneic mismatching was applied. T cell activation and cytokine expression were assessed using flow cytometry and Luminex. Myofibroblast activation was analysed through immunohistochemistry (IHC) and quantitative polymerase chain reaction (qPCR), while activation-induced contraction was measured macroscopically. Intracellular signalling pathway activation in myofibroblasts was evaluated using luciferase reporter cell lines. ResultsCo-culture of myofibroblasts with PBMCs strongly induced hydrogel contraction and expression of activation-related markers such as podoplanin, fibroblast activation protein, pSTAT3 and IL-6 in myofibroblasts. CD4+ T cells and CD8+ T cells were also activated by co-culture as identified by increased CD25 and CD69 expression and elevated IL-2 and IFN-{gamma} production. Upon co-culture with either sorted CD4+ or CD8+ T cells, CD8+ T cells more strongly induced myofibroblast contraction and activation than CD4+ T cells. This was not associated with cytotoxicity but with increased IL-6 production by CD8+ T cells compared to CD4+ T cells and STAT3/TGF{beta}-induced signaling in myofibroblasts. Use of either the JAK/STAT3-inhibitor tofacitinib or the TGF{beta} receptor inhibitor SB-505124 blocked the activated myofibroblast phenotype, and combined use of both inhibitors had an additive effect on myofibroblast activation and contraction. ConclusionsCD8+ T cells drive primary skin derived myofibroblast contraction and activation not via cytotoxicity-related program but via cytokine release. This sheds light on novel mechanisms of immune cell mediated tissue fibrosis. Furthermore, our results suggest that combining JAK/STAT inhibition with an anti-fibrotic agent that blocks matrix synthesis might be promising in mitigating immune cell mediated tissue fibrosis in connective tissue rheumatic disorders and has added value over blocking these pathways individually.

immunology↗

Deconvolution of bulk blood eQTL effects into immune cell subpopulations

Expression quantitative trait loci (eQTL) studies are used to interpret the function of disease-associated genetic risk factors. To date, most eQTL analyses have been conducted in bulk tissues, such as whole blood and tissue biopsies, which are likely to mask the cell type context of the eQTL regulatory effects. Although this context can be investigated by generating transcriptional profiles from purified cell subpopulations, the current methods are labor-intensive and expensive. Here we introduce a new method, Decon2, a statistical framework for estimating cell proportions using expression profiles from bulk blood samples (Decon-cell) and consecutive deconvolution of cell type eQTLs (Decon-eQTL). The estimated cell proportions from Decon-cell agree with experimental measurements across cohorts (R [≥] 0.77). Using Decon-cell we can predict the proportions of 34 circulating cell types for 3,194 samples from a population-based cohort. Next we identified 16,362 whole blood eQTLs and assign them to a cell type with Decon-eQTL using the predicted cell proportions from Decon-cell. Deconvoluted eQTLs show excellent allelic directional concordance with those of eQTL([≥] 96%) and chromatin mark QTL ([≥]87%) studies that used either purified cell subpopulations or single-cell RNA-seq. Our new method provides a way to assign cell type effects to eQTLs from bulk blood, which is useful in pinpointing the most relevant cell type for a certain complex disease. Decon2 is available as an R package and Java application (https://github.com/molgenis/systemsgenetics/tree/master/Decon2), and as a web tool (www.molgenis.org/deconvolution).

genomics↗