Biology subjects

Klotz, T.

Publications and source records attributed to Klotz, T..

6 recordsLinked to original sources

bioRxiv2026

EMG-BIDS: an extension to the Brain Imaging Data Structure for electromyography

Electromyography (EMG) is fundamental to clinical assessment, rehabilitation, neuromuscular research, and human-machine interfaces. Despite decades of use, no widely adopted standard exists for organizing and sharing EMG data, limiting reusability and large-scale data aggregation. We present EMG-BIDS, an extension to the Brain Imaging Data Structure (BIDS) that standardizes the organization of EMG recordings. EMG-BIDS addresses challenges unique to EMG, including diverse electrode types (surface or intramuscular, single channel to high-density arrays), heterogeneous electrode placements across anatomical locations, montages (e.g., monopolar or bipolar sensor designs), and the critical need for transparent documentation of sensor positioning. The specification introduces hierarchical coordinate systems that link local electrode grids to anatomical landmarks, enabling precise and reproducible placement documentation. EMG-BIDS is now part of BIDS as of version 1.11.0, supported by existing tools, including MNE-BIDS and EEGLAB. We demonstrate the specification through public datasets, including high-density surface EMG recordings. EMG-BIDS provides the foundation for FAIR (Findable, Accessible, Interoperable, Reusable) EMG data sharing, enabling meta-analyses, multi-site studies, and machine learning applications that require standardized, well-documented datasets.

neuroscience↗

bioRxiv2026

Motor Unit Number Estimation in Magnetomyography

ObjectiveInvestigation of the feasibility and characteristics of contactless motor unit number estimation (MUNE) using optically pumped magnetometer-based magnetomyography (OPM-MMG) as compared to surface electromyography (EMG). MethodsSimultaneous electrically evoked OPM-MMG and EMG signals of the abductor digiti minimi muscle (ADM) were measured in three healthy participants. To characterize MUNE across both modalities and account for within-subject physiological variability, 20 repetitions of electrical stimulation of the ulnar nerve at randomized intensities ranging from 5 to 30 mA in 0.1 mA increments were performed, resulting in a total of 5,020 evoked responses per subject. We quantitatively compared of MUNE and evoked EMG/MMG signal characteristics, including signal-to-noise ratio (SNR) and motor unit response amplitudes. SNR was equalized between measurement modalities to estimate the effect of SNR on MUNE. ResultsMMG-derived MUNE (mMUNE) could be assessed contactlessly. mMUNE estimates were on average 40% lower than EMG-derived MUNE (eMUNE), ranging from 30-65 for mMUNE versus 69-101 for eMUNE. Equalizing the EMG SNR (29-31 dB) to match the MMG SNR (18-27 dB) yielded comparable eMUNE and mMUNE estimates. Peak-to-peak amplitudes of the supramaximal compound motor unit fields ranged from 34-73 pT and single motor unit fields ranged from 0.7-1.4 pT. SignificanceThese findings demonstrate that OPM-MMG enables contactless motor unit number estimation.

neuroscience↗

bioRxiv2026

The variability of reflex amplitude estimates in motor unit pools depends on the phenotype distribution and discharge statistics

Motor unit (MU) activity during electrically or mechanically evoked reflexes is used to examine the relationship between neural inputs and MU properties. However, variations in single-MU reflex amplitudes are not fully understood and limit their reliability in determining the input-output relation of motor neurons (MNs). Using experiments and computer simulations, we investigated (i) whether MN discharge statistics and muscle activation explain the variability of reflex amplitude estimates and (ii) whether these variations are reflected differently across distinct reflex amplitude estimation methods. We analyzed MU spike trains extracted from isometric contractions of the tibialis anterior muscle at 10 % and 20 % MVC (maximum voluntary contraction). Estimating reflex amplitudes based on the peristimulus frequencygram (PSF) at 10 % MVC, the linear regression between discharge rate (DR) and reflex amplitude was always positive, with p < 0.05 in 3 out of 6 subjects; however, the linear correlation was inconsistent at 20 % MVC. We thereby observed that inter-subject variability was associated with the coefficient of variation of the interspike intervals. Furthermore, the linear correlation between DR and peristimulus time histogram (PSTH) based reflex amplitudes was inconsistent for both contraction forces. To obtain further insights into the influence of MN properties, we simulated reflexes in a heterogeneous MN population using electrical circuit models and varied MN inputs. The simulations indicate that, besides mean input current and membrane noise, MN properties also contribute to the variability of reflex amplitude estimates. The MN heterogeneity is well captured by PSF-based reflex estimates but not by PSTH-based ones. These results show that variations in amplitude estimates of individual MU reflexes are due to complex interactions between intrinsic and extrinsic factors. As PSF-based reflex amplitude estimates reflect the MN size distribution, tracking PSF-based reflex amplitudes at fixed MVC levels across individual subjects could serve as a marker for investigating spinal adaptations under (patho)physiological conditions. Author summaryMotor neurons are specialized nerve cells that control human movement. Each motor neuron activates a specific set of muscle fibers, and the functional unit consisting of a motor neuron and muscle fibers is called a motor unit. We can observe the activity of motor neurons in humans by decomposing the electrical activity of muscles (the electromyogram) into contributions from individual motor units. Reflex responses of motor units are often used to study the input-output relation of motor neurons in humans. We used a combination of experiments and computer simulations to study the factors that influence the reflex amplitude of motor units during an excitatory reflex. We found that the reflex amplitude is non-linearly influenced by a number of intrinsic and extrinsic factors, e. g., motor neuron size, but also the muscle force. Additionally, we found that these factors have different effects on the results of the two common methods used to calculate the reflex amplitude. These results provide guidance on choosing a suitable evaluation method and on interpreting reflex experiments.

neuroscience↗

bioRxiv2025

Dynamic balance of myoplasmic energetics and redox state in a fast-twitch oxidative glycolytic skeletal muscle fiber

In order to investigate the mechanisms governing energy and redox balance in skeletal muscle, we developed a computational model describing the coupled biochemical reaction network of glycolysis and mitochondrial oxidative phosphorylation (OxPhos) in fast-twitch oxidative glycolytic (FOG) muscle fibers. The model was identified against dynamic in vivo recordings of Phosphocreatine (PCr), inorganic Phosphate (Pi), and pH in rodent hindlimb muscle and verified against independent data from in vivo experiments and muscle biopsies. Step response testing revealed that mass action kinetics in combination with feedback control were sufficient to accomplish myoplasmic ATP homeostasis over a 100-fold range of ATP turnover rates. This vital emergent property of the metabolic model was associated with dynamic behaviour of intermediary metabolite concentrations similar to a second-order underdamped system that remains to be verified. The simulations additionally predicted that the lactate dehydrogenase (LDH) reaction makes substantial contributions to redox balance across the physiological range of ATP demands in this myofiber phenotype, while its role in slowing cellular acidification is minimal. Yet, LDH knock-out simulations revealed that oxidative recycling of myoplasmic NADH in and by itself sufficed to maintain redox balance over ATP turnover rates in the range of mitochondrial ATP synthesis. We conclude that aerobic lactate production in working muscles is a byproduct of the metabolic flexibility of FOG myofibers afforded by expression of high levels of LDH and OxPhos enzymes to support continual myoplasmic redox balance and ATP synthesis under conditions of high-intensity mechanical work. In the future, the presented simulation framework may be used to further enhance the understanding of how experimental observations in muscle emerge from the integrative behaviour of the metabolic network for carbohydrate metabolism in FOG myofibers.

physiology↗

bioRxiv2023

Postinhibitory excitation in motoneurons can be facilitated by hyperpolarization-activated inward currents: a simulation study

Postinhibitory excitation is a transient overshoot of a neurons baseline firing rate following an inhibitory stimulus and can be observed in vivo in human motoneurons. However, the biophysical origin of this phenomenon is still unknown and both reflex pathways and intrinsic motoneuron properties have been proposed. We hypothesized that postinhibitory excitation in motoneurons can be facilitated by hyperpolarization-activated inward currents (h-currents). Using an electrical circuit model we investigated how h-currents can modulate the postinhibitory response of motoneurons. Further, we analyzed the spike trains of human motor units from the tibialis anterior muscle during reciprocal inhibition. The simulations revealed that the activation of h-currents by an inhibitory postsynaptic potential can cause a short-term increase in a motoneurons firing probability. This result suggests that the neuron can be excited by an inhibitory stimulus. In detail, the modulation of the firing probability depends on the time delay between the inhibitory stimulus and the previous action potential. Further, the strength of the postinhibitory excitation correlates with the amplitude of the inhibitory stimulus and is negatively correlated with the baseline firing rate as well as the level of input noise. Hallmarks of h-current activity, as identified from the modeling study, were found in 50 % of the human motor units that showed postinhibitory excitation. This study suggests that h-currents can facilitate postinhibitory excitation and act as a modulatory system to increase motoneuron excitability after a strong inhibition. Author SummaryHuman movement is determined by the activity of specialized nerve cells, the motoneurons. Each motoneuron activates a specific set of muscle fibers. The functional unit consisting of a neuron and muscle fibers is called a motor unit. The activity of motoneurons can be observed noninvasively in living humans by recording the electrical activity of the motor units using the electromyogram. We studied the behavior of human motor units in an inhibitory reflex pathway and found an unexpected response pattern: a rebound-like excitation following the inhibition. This has occasionally been reported for human motor units, but its origin has never been systematically studied. In non-human cells of the neural system, earlier studies reported that a specific membrane protein, the so-called h-channel, can cause postinhibitory excitation. In our study, we use a computational motoneuron model to investigate whether h-channels can cause postinhibitory excitation as observed in the experimental recordings. Using the model, we developed a method to detect features of h-channel activity in human recordings. Because we found these features in a half of the recorded motor units, we conclude that h-channels can facilitate postinhibitory excitation in human motoneurons.

neuroscience↗

bioRxiv2018

Mass Mortality of Wood Frogs (Rana sylvatica) in the Ozark National Forest: Is it Acid Rain?

We describe observations of a continuing mass mortality event primarily involving wood frogs, but involving other amphibians to a lesser degree. The investigation took place from Spring 2000 through Spring 2004. No definitive correlations between environmental variables and mortality could be identified. Forensic analysis could not isolate causal pathogens. Although mortality fluctuated during the study, it may have spread to other species. Our report identifies population level problems in the eastern part of the Ozark National Forest but is unable to identify a cause. Future studies that more thoroughly address contaminants, pathogens/parasites, and other potential environmental problems in the Ozark National Forest are warranted.

ecology↗