bioRxiv Science⌕ Search

Biology subjects

Kitaoku, Y.

Publications and source records attributed to Kitaoku, Y..

3 recordsLinked to original sources

Reconstitution in a minimal synthetic bacterium reveals distinct Mollicute MreB-based motility systems driven by orthogonal force directions

MreB, a bacterial actin homolog, is widely conserved in bacteria where it functions as a scaffold for a peptidoglycan synthesis. Intriguingly, members of the cell wall-lacking Mollicutes retain multiple mreB genes despite the absence of peptidoglycan. Previous work demonstrated that two MreB isoforms from Spiroplasma can reconstitute swimming motility in the minimal synthetic bacterium syn3B, indicating that MreB was repurposed for motility. Here, we expressed seven MreBs from Haloplasma contractile, an early-diverging Mollicute, in syn3B. Approximately 50% of cells elongated, and 15% exhibited curving and coiling movements that resembled Haloplasma but differed from Spiroplasma motility. Systematic analysis of isoform combinations revealed that movement requires specific MreB pairs, and that additional isoforms enhance motility efficiency. Cryo-electron tomography showed membrane-associated ribbons composed of MreB filaments. Mathematical modeling demonstrated that Haloplasma- and Spiroplasma-type movements can be reproduced by altering only the direction of force generation. Thus, diversification of force orientation within an actin homolog enabled independent evolution of distinct motility systems in Mollicutes.

Synthetic Biology↗

Bacterial genome encoded ParMs

ParMs generally exist on low copy number plasmids where they contribute to plasmid segregation and stable inheritance. We carried out bioinformatics analysis, which indicated that ParM genes are not only confined to plasmids but are also occasionally found on genomes. Here we report the discovery and characterization of two chromosome encoded ParMs (cParMs) from the genomes of Desulfitobacterium hafniense (Dh-cParM1) and Clostridium botulinum (Cb-cParM). Both cParMs form filaments, exhibit nucleotide hydrolysis, and possess characteristic ParM subunit structures. Dh-cParM1 forms single and tightly coupled double filaments and is highly conserved on the chromosomes of five of six Desulfitobacterium species. Interestingly, these bacteria have not been reported to harbour plasmids. Cb-cParM possesses unique properties. Its filaments were stable after nucleotide hydrolysis and Pi release, and its ParR, (Cb-cParR) did not affect the initial stage of Cb-cParM polymerization but displayed properties of a depolymerization factor for mature filaments. These results indicate functional, polymerizing ParMs can be encoded on genomes, suggesting that ParM roles may extend to other functions beyond plasmid segregation.

microbiology↗

An actin-like filament from Clostridium botulinum exhibits a novel mechanism of filament dynamics

Here, we report the discovery of a ParM protein from Clostridium botulinum (CBgs-ParM), which forms a double-stranded polar filament. CBgs-ParM shares many similarities in its basic filament architecture with actin, however, Pi release after nucleotide hydrolysis induces a large lateral strand shift of ~2.5 nm. We identified the ParR (CBgs-ParR) that acts as a nucleation factor in the initial stage of polymerization, similar to ParR from Escherichia coli plasmid R1. CBgs-ParR also functions as a depolymerization factor, probably by recognizing the structural change in the CBgs-ParM filament after Pi release. Comparison with CBH-ParM, another ParM from Clostridum botulinum, showed that subunit-subunit interacting regions largely differ, preventing co-polymerization, implying a selection pressure in evolution to prevent interference between different ParMRC systems.

biophysics↗