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Kirby, B.

Publications and source records attributed to Kirby, B..

3 recordsLinked to original sources

Feasibility of Using Functional Near-Infrared Spectroscopy for Characterizing Misophonia-Related Brain Activity

Significance: Misophonia is characterized by decreased tolerance to specific sounds ("triggers") that evoke negative emotional, physiological, and behavioral responses. To understand the neural mechanisms underlying misophonia, functional neuroimaging has been proposed such as functional magnetic resonance imaging (fMRI). However, the fMRI environment introduces substantial noise that increases anxiety, which is one of the comorbidities of misophonia, confounds auditory stimuli, and is costly. We therefore propose an alternative, functional near-infrared spectroscopy (fNIRS) to detect misophonia-related responses. Aim: We evaluated the feasibility of fNIRS to detect misophonia-related sound-evoked responses. Approach: We measured fNIRS, electrodermal activity (EDA), and photoplethysmography (PPG) data from ten adults with minimal to mild misophonia symptoms while they listened to trigger, unpleasant, and neutral sounds. Participants rated their annoyance and antisociality after each sound. Results: Compared with neutral sounds, trigger and unpleasant sounds received higher subjective ratings and evoked greater neural response in the orofacial area. Neural responses tended to increase with annoyance ratings. Significantly lower heart rate (HR) was observed during unpleasant sounds than during neutral and trigger sounds, with no significant difference in EDA features. Conclusions: fNIRS can measure misophonia responses in a quiet setting. Both brain and physiological responses have the same trend observed in prior fMRI studies, verifying its feasibility.

neuroscience↗

The one-week automated genome-wide optical pooled screen

Optical pooled screens (OPS) are bottlenecked by labor-intensive in situ sequencing and analysis protocols. Here we present OttoSeq, an automated OPS platform combining the Otto2 fluid handling system with the Brieflow analysis pipeline. We utilized OttoSeq to complete a genome-wide cell painting screen in eight days, sampling more than 5 million high-quality cells across 21,732 gene knockout perturbations (224 cells per gene) and interpreting 320 functional gene clusters.

genomics↗

DNA ligases of Prochlorococcus marinus: an evolutionary exception to the rules of replication

DNA ligases, essential enzymes which re-join the backbone of DNA come in two structurally-distinct isoforms, NAD-dependent and ATP-dependent, which differ in cofactor usage. The present view is that all bacteria exclusively use NAD-dependent DNA ligases for DNA replication, while archaea and eukaryotes use ATP-dependent DNA ligases. Some bacteria also possess auxiliary ATP-dependent DNA ligases; however, these are only employed for specialist DNA repair processes. Here we show that in the genomes of high-light strains of the marine cyanobacterium Prochlorococcocus marinus, an ATP-dependent DNA ligase has replaced the NAD-dependent form, overturning the present paradigm of a clear evolutionary split in ligase usage. Genes encoding partial NAD-dependent DNA ligases are found on mobile regions in highlight genomes and lack domains required for catalytic function. This constitutes the first reported example of a bacterium that relies on an ATP-dependent DNA ligase for DNA replication and recommends P. marinus as a model to investigate the evolutionary origins of these essential DNA-processing enzymes.

molecular biology↗