bioRxiv ScienceSearch

Biology subjects

Kherif, F.

Publications and source records attributed to Kherif, F..

2 recordsLinked to original sources

Multiple Linear Regression: Bayesian Inference for Distributed and Big Data in the Medical Informatics Platform of the Human Brain Project

We propose a Multiple Linear Regression (MLR) methodology for the analysis of distributed and Big Data in the framework of the Medical Informatics Platform (MIP) of the Human Brain Project (HBP). MLR is a very versatile model, and is considered one of the workhorses for estimating dependences between clinical, neuropsychological and neurophysiological variables in the field of neuroimaging. One of the main concepts behind MIP is to federate data, which is stored locally in geographically distributed sites (hospitals, customized databases, etc.) around the world. We restrain from using a unique federation node for two main reasons: first the maintenance of data privacy, and second the efficiency in management of big volumes of data in terms of latency and storage resources needed in the federation node. Considering these conditions and the distributed nature of data, MLR cannot be estimated in the classical way, which raises the necessity of modifications of the standard algorithms. We use the Bayesian formalism that provides the armamentarium necessary to implement the MLR methodology for distributed Big Data. It allows us to account for the heterogeneity of the possible mechanisms that explain data sets across sites expressed through different models of explanatory variables. This approach enables the integration of highly heterogeneous data coming from different subjects and hospitals across the globe. Additionally, it offers general and sophisticated ways, which are extendable to other statistical models, to suit high-dimensional and distributed multimodal data. This work forms part of a series of papers related to the methodological developments embedded in the MIP.

neuroscience

Convex Optimized Population Receptive Field (CO-pRF) Mapping

Population receptive field (pRF) mapping represents an invaluable non-invasive tool for the study of sensory organization and plasticity within the human brain. Despite the very appealing result that fMRI derived pRF measures agree well with measurements made from other fields of neuroscience, current techniques often require very computationally expensive non-linear optimization procedures to fit the models to the data which are also vulnerable to bias due local minima issues. In this work we present a general framework for pRF model estimation termed Convex Optimized Population Receptive Field (CO-pRF) mapping and show how the pRF fitting problem can be linearized in order to be solved by extremely fast and efficient algorithms. The framework is general and can be readily applied to a variety of pRF models and measurement schemes. We provide an example of the CO-pRF methodology as applied to a computational neuroimaging approach used to map sensory processes in human visual cortex - the CSS-pRF model. Via simulation and in-vivo fMRI results we demonstrate that the CO-pRF approach achieves robust model fitting even in the presence of noise or reduced data, providing parameter estimates closer to the global optimum across 93% of in-vivo responses as compared to a typical nonlinear optimization procedure. Furthermore the example CO-pRF application substantially reduced model fitting times by a factor of 50. We hope that the availability of such highly accelerated and reliable pRF estimation algorithms will facilitate the spread of pRF techniques to larger imaging cohorts and the future study of neurological disorders and plasticity within the human brain.

neuroscience