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Khan, T. M.

Publications and source records attributed to Khan, T. M..

3 recordsLinked to original sources

Asymmetric leading vs. trailing edge shifts since the Last Glacial Maximum underpin the modern bimodal latitudinal diversity gradient in planktonic foraminifera

AimThe modern latitudinal diversity gradient of planktonic foraminifera is bimodal with a distinct depression near the equator, surrounded by mid-latitude diversity peaks. This pattern emerged after the Last Glacial Maximum, but it is unclear how species spatial dynamics contributed to its formation. Here, we investigate how species range dynamics, i.e., trailing-edge contractions (extirpations) and leading-edge expansions (colonisations), shaped the modern bimodal pattern, and how global biodiversity patterns arise from local patterns. LocationGlobal open ocean, with basin-specific analyses in the Atlantic and Pacific Oceans. Time periodLast Glacial Maximum (19 - 23 ka) (LGM) and the Pre-Industrial (modern) Major taxa studiedPlanktonic foraminifera (unicellular eukaryotes) MethodsWe analysed taxonomically standardized LGM and modern foraminiferal assemblage datasets to characterize changes in species richness at multiple spatial scales: global ocean, basin-wide, and within basin. We quantified species range shifts by comparing their trailing- and leading-edge movements. We estimated temporal turnover locally, and the net imbalance between colonisations and extirpations (NICE) within sites, and tested whether species thermal preferences correlate with their extirpation risk. ResultsWe found no evidence of systematic trailing edge contractions, indicating that equatorial extirpations did not drive the bimodal LDG pattern. In the Atlantic, leading-edge expansions generated a coherent increase in species richness in the mid-latitudes, whereas the Pacific exhibited highly spatially heterogeneous responses, including extirpation hotspots in the western tropical Pacific and colonisation zones in the eastern and southern Pacific. Species thermal optima weakly predicted extirpations, with species adapted to lower temperatures more at risk of extirpation, consistent with the general warming trend since the last ice age. Main conclusionsThe modern bimodal LDG of planktonic foraminifera arises primarily from mid-latitude colonisations rather than equatorial extirpations. Colonisations were particularly frequent in the North Atlantic. Localized extirpations in the western Pacific highlight small-scale patches of vulnerability, that spatially aggregated richness metrics mask. Our results underscore the need to distinguish between trailing and leading processes in climate-induced range shifts, and to consider spatial variability in monitoring and protection of marine biodiversity.

ecology↗

A simple circuit to sustain intact tumor microenvironments for complex drug interrogations

Deep learning and large language models can integrate complex datasets to uncover biological insights that are often undetectable through conventional analyses. With application to translational cancer research, these computational tools have positioned 3D patient-derived tumor avatars front and center as crucial data input sources. However, a major challenge remains: the lack of standardization in media composition in 3D patient-derived tumor models unpredictably affects cell behavior and limit the utility beyond predicting treatment responses. To address this unmet need, we developed a simple, reproducible perfusion circuit system to approximate in vivo physiology using autologous patient plasma. With peritoneal metastases and core needle biopsies across multiple tumor histologies, we demonstrate preservation of the tumor microenvironment for up to 48 hours using multi-modal interrogation techniques. With proof-of-concept experiments, we display the systems ability to unveil complex drug-dependent biology within this time window. Standardizable, physiologically relevant platforms for 3D patient-derived tumor avatars will yield unprecedented insights through the integration of data from broad groups of patients and the use of an expanding armamentarium of artificial intelligence capabilities.

cancer biology↗

Community ecology dynamics on reefs in Fiji are dependent on soft coral density and depth

Some soft corals (order Alcyonacea) have the potential to increase in prevalence on tropical coral reefs as the severity of anthropogenic climate change increases. While soft corals are therefore an increasingly important component of reef ecosystems, little is known about their ecological role on coral reefs and their influence on community dynamics and diversity. We used Bayesian Network Inference to identify the relationships among benthic taxa across sites with varying degrees of soft coral dominance on the Great White Wall, Fiji, and then employed spatial point process analysis to reveal the ecological processes behind these associations. We found that depth was the dominant driver of community dynamics, and that white Nephtheidae soft corals were negatively associated with scleractinian corals and positively associated with algae due to a facilitative mutualism - possibly due to soft corals reducing grazing pressure. Our results show distinctions in reef benthos and ecological dynamics between scleractinian- and soft coral-dominated reefs. We found that diversity levels were significantly lower on soft coral than scleractinian reefs, potentially highlighting the risk of a loss in benthic diversity on reefs where soft corals replace scleractinians.

ecology↗