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Keshavanarayana, P.

Publications and source records attributed to Keshavanarayana, P..

4 recordsLinked to original sources

The role of contact guidance and ECM remodelling in cancer invasion: a computational study

The extracellular matrix (ECM) is a complex network of fibrous proteins and other macromolecules that provides both structural support and directional cues that regulate cancer cell invasion and tumour progression. Its fibre organisation plays a critical role in directing migration through contact guidance, while cancer cells simultaneously remodel the matrix through biochemical and mechanical interactions. However, the interplay between ECM architecture, chemical gradients, and matrix remodelling remains poorly understood. Mathematical modelling offers a powerful approach to explore how ECM architecture regulates this process. We present a hybrid computational model, implemented in PhysiCell, that integrates a discrete agent-based cell model with a continuous representation of the chemical microenvironment and ECM microstructure. In an advance over previous efforts, we adapt several mechanisms to a fibre-focused representation of the ECM, including "cell-front" ECM sensing reflecting protrusion-driven engagement of the matrix, contact-guided cell movement via ECM fibre orientation integrated with chemotaxis bias, and proliferation regulated by oxygen and mechanical pressure. In addition, we introduce a new mechanical mechanism for ECM density displacement alongside degradation to simulate how cells redistribute matrix fibres. Simulations reveal how the interplay between initial fibre alignment, anisotropy (fibre-fibre alignment correlation), and fibre reorientation capacity affects invasion, and how competing mechanical and chemical cues influence the invasive potential of tumour cells. Furthermore, our results demonstrate that the balance between degradation and displacement strongly affects invasion dynamics, with high displacement promoting the formation of dense ECM rims around tumour spheroids, whereas increased degradation enables greater invasive spread. This work provides mechanistic insights into bidirectional interactions between cancer cells and the surrounding ECM, highlighting how structural remodelling of the ECM influences the invasive potential of cancer cells. Author summaryCancer cells invade surrounding tissue by interacting with the extracellular matrix (ECM), a fibrous network of proteins that provides both mechanical support and directional cues for migration. Experiments have shown that the orientation of ECM fibres can either promote or hinder invasion, but it remains difficult to disentangle the underlying mechanisms because cells both respond to and actively remodel the matrix. To address this challenge, we developed a computational model that simulates how cancer cells migrate through and reshape the ECM. The model combines individual cell behaviour with a representation of ECM structure, including fibre orientation, anisotropy (fibre-fibre alignment correlation), and density. Our simulations show that invasion depends on the initial fibre orientation and on chemical cues. We also introduce a mechanism that allows cells to mechanically displace the matrix, revealing how the balance between matrix degradation and physical pushing can generate either compact tumour growth or sparse invasion. These results help explain how physical interactions between cells and their environment shape tumour invasion. More broadly, the framework provides a tool to explore how mechanical and chemical signals together regulate collective cell migration in cancer and other biological systems.

systems biology↗

Curvature-dependent morphological reorganization of the endoplasmic reticulum determines the mode of epithelial migration

From single-cell extrusion to centimeter-sized wounds, epithelial gaps of various sizes and geometries appear in all organisms. For gap closure, epithelial cells invoke two orthogonal modes: lamellipodial crawling at the convex edge and purse-string-like movements at the concave edge. The mechanisms underlying these differential responses to geometric cues remain elusive. Here we perform an intracellular cartography to reveal that in both micropatterned and naturally arising gaps, the endoplasmic reticulum (ER) undergoes edge curvature-dependent morphological reorganizations with convex and concave edges promoting ER tubules and sheets, respectively. This reorganization depends on cytoskeleton-generated protrusive and contractile forces. Additionally, theoretical modeling predicts that the curvature-specific ER morphology leads to a lower strain energy state. ER tubules at the convex edge favor perpendicularly oriented focal adhesions, supporting lamellipodial crawling while ER sheets at the concave edge favor parallelly oriented focal adhesions, supporting purse-string-like movements. Altogether, ER emerges as a central player in cellular mechanotransduction, which orchestrates two orthogonal modes of cell migration by integrating signals from cytoskeletal networks.

cell biology↗

A hybrid computational model of cancer spheroid growth with ribose-induced collagen stiffening

Metastasis, the leading cause of death in cancer patients, arises when cancer cells disseminate from a primary solid tumour to distant organs. Growth and invasion of the solid tumour often involve collective cell migration, which is profoundly influenced by cell-cell interactions and the extracellular matrix (ECM). The ECMs biochemical composition and mechanical properties, such as stiffness, regulate cancer cell behaviour and migration dynamics. Mathematical modelling serves as a pivotal tool for studying and predicting these complex dynamics, with hybrid discrete-continuous models offering a powerful approach by combining agent-based representations of cells with continuum descriptions of the surrounding microenvironment. In this study, we investigate the impact of ECM stiffness, modulated via ribose-induced collagen cross-linking, on cancer spheroid growth and invasion. We employed a hybrid discrete-continuous model implemented in PhysiCell to simulate spheroid dynamics, successfully replicating three-dimensional in vitro experiments. The model incorporates detailed representations of cell-cell and cell-ECM interactions, ECM remodelling, and cell proliferation. Our simulations align with experimental observations of two breast cancer cell lines, non-invasive MCF7 and invasive HCC1954, under varying ECM stiffness conditions. The results demonstrate that increased ECM stiffness due to ribose-induced cross-linking inhibits spheroid invasion in invasive cells, whereas non-invasive cells remain largely unaffected. Furthermore, our simulations show that higher ECM degradation by the cells not only enables spheroid growth and invasion but also facilitates the formation of multicellular protrusions. Conversely, increasing the maximum speed that cells can reach due to cell-ECM interactions enhances spheroid growth while promoting single-cell invasion. This hybrid modelling approach enhances our understanding of the interplay between cancer cell migration, proliferation, and ECM mechanical properties, paving the way for future studies incorporating additional ECM characteristics and microenvironmental conditions.

systems biology↗

A mechanical modelling framework to study endothelial permeability

The inner lining of blood vessels, the endothelium, is made up of endothelial cells. Vascular endothelial (VE)-cadherin protein forms a bond with VE-cadherin from neighbouring cells (homophilic bond) to determine the size of gaps between the cells and thereby regulate the size of particles that can cross the endothelium. Chemical cues such as Thrombin, along with mechanical properties of the cell and extracellular matrix (ECM) are known to affect the permeability of endothelial cells. Abnormal permeability is found in patients suffering from diseases including cardiovascular diseases, cancer, and COVID-19. Even though some of the regulatory mechanisms affecting endothelial permeability are well studied, details of how several mechanical and chemical stimuli acting simultaneously affect endothelial permeability are not yet understood. In this article, we present a continuum-level mechanical modelling framework to study the highly dynamic nature of the VE-cadherin bonds. Taking inspiration from the catch-slip behaviour that VE-cadherin complexes are known to exhibit, we model VE-cadherin homophilic bond as cohesive contact with damage following a traction-separation law. We explicitly model the actin-cytoskeleton, and substrate to study their role in permeability. Our studies show that mechano-chemical coupling is necessary to simulate the influence of the mechanical properties of the substrate on permeability. Simulations show that shear between cells is responsible for the variation in permeability between bi-cellular and tri-cellular junctions, explaining the phenotypic differences observed in experiments. An increase in the magnitude of traction force that endothelial cells experience results in increased permeability, and it is found that the effect is higher on stiffer ECM. Finally, we show that the cylindrical monolayer exhibits higher permeability than the planar monolayer under unconstrained cases. Thus, we present a contact mechanics-based mechano-chemical model to investigate the variation in permeability of endothelial monolayer due to multiple loads acting simultaneously.

cell biology↗